Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01006511.1 Corchorus capsularis cultivar CVL-1 contig06532, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 14306
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.34


Found at i:1858 original size:18 final size:19

Alignment explanation


    Indices: 1824--1859  Score: 56
    Period size: 18  Copynumber: 1.9  Consensus size: 19

       1814 GTTAAATTTC

                      *        
       1824 ATTATATGAACAATAAATG
          1 ATTATATGAAAAATAAATG

                              
       1843 ATTATAT-AAAAATAAAT
          1 ATTATATGAAAAATAAAT

       1860 ACTAAATCAG


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  18    9  0.56
  19    7  0.44

ACGTcount: A:0.58, C:0.03, G:0.06, T:0.33


Consensus pattern (19 bp):   
ATTATATGAAAAATAAATG
Done.