Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006513.1 Corchorus capsularis cultivar CVL-1 contig06534, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20392

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
696--731
19
1.9
18
88
5
54
41
2
22
33
1.68
2461--2818
157
2.3
156
81
7
388
31
16
18
33
1.93
3178--3210
17
1.9
17
100
0
66
30
36
6
27
1.81
3970--4049
23
3.5
23
74
3
81
36
11
7
45
1.68
3958--4238
22
13.0
22
69
11
145
35
14
8
41
1.76
4054--4236
66
2.8
63
76
8
161
35
14
8
41
1.76
4183--4240
20
2.7
22
89
5
84
34
13
10
41
1.79
4257--4306
22
2.3
22
92
0
82
42
8
14
36
1.74
4425--4672
22
11.4
22
69
13
111
40
8
15
36
1.77
4602--4670
23
3.0
23
85
6
79
39
7
15
37
1.76
5877--5933
23
2.5
23
86
8
73
35
10
12
42
1.77
9679--9732
28
1.9
28
96
0
99
33
16
18
31
1.93
12708--12797
45
2.0
45
100
0
180
33
11
11
44
1.75

Tables:   1

The End!