Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006515.1 Corchorus capsularis cultivar CVL-1 contig06536, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  34767

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4687--4725
17
2.4
17
86
4
53
15
0
2
82
0.79
4981--5055
16
4.8
16
79
9
73
40
38
13
8
1.74
4981--5055
31
2.4
32
82
8
91
40
38
13
8
1.74
6058--6090
2
16.0
2
93
6
57
48
3
0
48
1.17
6394--6431
15
2.4
17
87
12
55
36
39
15
7
1.77
9241--9273
2
16.0
2
93
6
57
48
0
3
48
1.17
12764--12825
32
1.9
32
90
0
97
22
12
12
51
1.74
12964--13025
32
1.9
32
90
0
97
24
12
12
50
1.76
12669--13052
200
1.9
200
95
1
698
24
15
12
47
1.79
13758--13790
2
17.0
2
87
6
50
51
0
0
48
1.00
16753--16815
30
2.1
30
88
5
92
20
38
14
26
1.91
17156--17302
33
4.5
33
86
2
192
41
17
9
31
1.81
20841--20867
2
13.5
2
100
0
54
51
0
0
48
1.00
22069--22210
69
2.1
69
100
0
284
47
16
4
31
1.65
22379--22403
12
2.1
12
100
0
50
8
8
0
84
0.79
23283--23334
19
2.8
18
78
13
61
55
3
0
40
1.18
27202--27357
81
1.9
81
93
0
267
23
20
26
30
1.99
29883--29948
31
2.1
31
83
5
80
33
18
3
45
1.65
30128--30321
96
2.0
97
98
1
381
23
15
15
44
1.85
31756--31969
106
2.0
106
95
0
383
36
28
10
24
1.88
34406--34444
17
2.3
17
90
0
60
28
2
38
30
1.70

Tables:   1

The End!