Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01006518.1 Corchorus capsularis cultivar CVL-1 contig06539, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 33616
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.32
Found at i:437 original size:31 final size:33
Alignment explanation
Indices: 364--438 Score: 84
Period size: 31 Copynumber: 2.3 Consensus size: 33
354 TTTTCTTTGG
* *
364 TTTCTTCAAAAAACTTGATTTTTAATTGTACCCA
1 TTTCTTC-AAAAACTAGATTTTTAATGGTACCCA
* *
398 -TTCCTCAAAAAC-AGATTTTTTA-GGTACCCA
1 TTTCTTCAAAAACTAGATTTTTAATGGTACCCA
428 TTTCTTCAAAA
1 TTTCTTCAAAA
439 TCGAATCTTT
Statistics
Matches: 35, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
30 7 0.20
31 17 0.49
32 6 0.17
33 5 0.14
ACGTcount: A:0.33, C:0.20, G:0.07, T:0.40
Consensus pattern (33 bp):
TTTCTTCAAAAACTAGATTTTTAATGGTACCCA
Found at i:5143 original size:38 final size:38
Alignment explanation
Indices: 5101--5177 Score: 127
Period size: 38 Copynumber: 2.0 Consensus size: 38
5091 ATGATGACAG
* *
5101 CACCTAAATAGGAGTAGCATAGGTGTGAATGAACTGAA
1 CACCTAAATAGGAGTAGCACACGTGTGAATGAACTGAA
*
5139 CACCTAAGTAGGAGTAGCACACGTGTGAATGAACTGAA
1 CACCTAAATAGGAGTAGCACACGTGTGAATGAACTGAA
5177 C
1 C
5178 TTCCATTTAT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.38, C:0.17, G:0.26, T:0.19
Consensus pattern (38 bp):
CACCTAAATAGGAGTAGCACACGTGTGAATGAACTGAA
Found at i:7429 original size:31 final size:31
Alignment explanation
Indices: 7394--7554 Score: 173
Period size: 31 Copynumber: 5.3 Consensus size: 31
7384 TAATTTTGTG
* **
7394 CATGTGGCATGCCACATGTCACTTTTTGAAA
1 CATGTGGCGTGCCACATGTCACTTTTTGGTA
* *
7425 CATGTGGCATGCCACATGTCACTTTGTGGTA
1 CATGTGGCGTGCCACATGTCACTTTTTGGTA
* * **
7456 CACGTGGCGTGACATGTGTCACTTTTTGGTA
1 CATGTGGCGTGCCACATGTCACTTTTTGGTA
* * *
7487 CATATGGCGTG--ATATGTCACTTTTTGGCA
1 CATGTGGCGTGCCACATGTCACTTTTTGGTA
* *
7516 CACGTGGCGTGCCACATGTCACTTTTTTGTA
1 CATGTGGCGTGCCACATGTCACTTTTTGGTA
*
7547 CACGTGGC
1 CATGTGGC
7555 ATGCTACGTC
Statistics
Matches: 110, Mismatches: 18, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
29 25 0.23
31 85 0.77
ACGTcount: A:0.19, C:0.22, G:0.25, T:0.34
Consensus pattern (31 bp):
CATGTGGCGTGCCACATGTCACTTTTTGGTA
Found at i:14023 original size:3 final size:3
Alignment explanation
Indices: 14017--14073 Score: 114
Period size: 3 Copynumber: 19.0 Consensus size: 3
14007 ATGCAAAAAA
14017 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
14065 AAG AAG AAG
1 AAG AAG AAG
14074 GTGCAATGCA
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 54 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:15779 original size:15 final size:14
Alignment explanation
Indices: 15723--15779 Score: 53
Period size: 15 Copynumber: 3.9 Consensus size: 14
15713 TAGCCTCCAA
15723 TTCTATTTCTTCTT
1 TTCTATTTCTTCTT
* *
15737 CTT-TTTTTCTTTTT
1 -TTCTATTTCTTCTT
*
15751 TTCTATTCTTTTCTT
1 TTCTATT-TCTTCTT
15766 TTCTAATTTCTTCT
1 TTCT-ATTTCTTCT
15780 CTATTTTCCT
Statistics
Matches: 33, Mismatches: 6, Indels: 6
0.73 0.13 0.13
Matches are distributed among these distances:
13 2 0.06
14 12 0.36
15 16 0.48
16 3 0.09
ACGTcount: A:0.07, C:0.19, G:0.00, T:0.74
Consensus pattern (14 bp):
TTCTATTTCTTCTT
Found at i:15855 original size:15 final size:15
Alignment explanation
Indices: 15835--15876 Score: 61
Period size: 15 Copynumber: 2.9 Consensus size: 15
15825 ATCCGATATA
15835 AATTAATATATATTT
1 AATTAATATATATTT
15850 AATTAATATATA-TT
1 AATTAATATATATTT
15864 ATATT-ATATATAT
1 A-ATTAATATATAT
15877 GCATTAAAGT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
14 10 0.40
15 15 0.60
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
AATTAATATATATTT
Found at i:17388 original size:15 final size:15
Alignment explanation
Indices: 17363--17406 Score: 54
Period size: 15 Copynumber: 3.0 Consensus size: 15
17353 AATTATTTAT
17363 AAAATAA-ATAAAAA
1 AAAATAATATAAAAA
17377 AAAATAATATAAAAA
1 AAAATAATATAAAAA
* * *
17392 TAAATTATAGAAAAA
1 AAAATAATATAAAAA
17407 TATACTTAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
14 7 0.27
15 19 0.73
ACGTcount: A:0.77, C:0.00, G:0.02, T:0.20
Consensus pattern (15 bp):
AAAATAATATAAAAA
Found at i:18079 original size:37 final size:37
Alignment explanation
Indices: 18038--18120 Score: 166
Period size: 37 Copynumber: 2.2 Consensus size: 37
18028 AACGTTCTAC
18038 CGTCTTGCCTATTTTTTAACGTTTTACCGAGTTCATT
1 CGTCTTGCCTATTTTTTAACGTTTTACCGAGTTCATT
18075 CGTCTTGCCTATTTTTTAACGTTTTACCGAGTTCATT
1 CGTCTTGCCTATTTTTTAACGTTTTACCGAGTTCATT
18112 CGTCTTGCC
1 CGTCTTGCC
18121 CTAATAATTG
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 46 1.00
ACGTcount: A:0.14, C:0.24, G:0.14, T:0.47
Consensus pattern (37 bp):
CGTCTTGCCTATTTTTTAACGTTTTACCGAGTTCATT
Found at i:19047 original size:20 final size:21
Alignment explanation
Indices: 19007--19050 Score: 63
Period size: 20 Copynumber: 2.1 Consensus size: 21
18997 AAAATTATTA
**
19007 AAAAGGGGGGCGGTATTTAGC
1 AAAAGGGGGGCGGTAAATAGC
19028 AAAA-GGGGGCGGTAAATAGC
1 AAAAGGGGGGCGGTAAATAGC
19048 AAA
1 AAA
19051 CCCCTTTGTG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 17 0.81
21 4 0.19
ACGTcount: A:0.39, C:0.09, G:0.39, T:0.14
Consensus pattern (21 bp):
AAAAGGGGGGCGGTAAATAGC
Found at i:22199 original size:3 final size:3
Alignment explanation
Indices: 22191--22224 Score: 50
Period size: 3 Copynumber: 11.3 Consensus size: 3
22181 AATGATTATA
* *
22191 ATG ATG ATG ATT ATG ATT ATG ATG ATG ATG ATG A
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG A
22225 CCCAATTGCT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.35, C:0.00, G:0.26, T:0.38
Consensus pattern (3 bp):
ATG
Found at i:22202 original size:15 final size:15
Alignment explanation
Indices: 22182--22216 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
22172 ATAAGCATGA
22182 ATGATTATAATGATG
1 ATGATTATAATGATG
* *
22197 ATGATTATGATTATG
1 ATGATTATAATGATG
22212 ATGAT
1 ATGAT
22217 GATGATGACC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.37, C:0.00, G:0.20, T:0.43
Consensus pattern (15 bp):
ATGATTATAATGATG
Found at i:25868 original size:30 final size:30
Alignment explanation
Indices: 25834--25905 Score: 117
Period size: 30 Copynumber: 2.4 Consensus size: 30
25824 TCATTGGACC
*
25834 TTGCTTGTGTTTCTTCATTACATGTCAATT
1 TTGCTTGGGTTTCTTCATTACATGTCAATT
**
25864 TTGCTTGGGTTTCTTCATTACATGTTGATT
1 TTGCTTGGGTTTCTTCATTACATGTCAATT
25894 TTGCTTGGGTTT
1 TTGCTTGGGTTT
25906 GCTTATATAT
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 39 1.00
ACGTcount: A:0.12, C:0.14, G:0.19, T:0.54
Consensus pattern (30 bp):
TTGCTTGGGTTTCTTCATTACATGTCAATT
Found at i:28008 original size:13 final size:13
Alignment explanation
Indices: 27990--28017 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
27980 ATTCCTTATG
27990 CATTTGAACTATT
1 CATTTGAACTATT
28003 CATTTGAACTATT
1 CATTTGAACTATT
28016 CA
1 CA
28018 AATTTAAAGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.32, C:0.18, G:0.07, T:0.43
Consensus pattern (13 bp):
CATTTGAACTATT
Found at i:30142 original size:46 final size:45
Alignment explanation
Indices: 30072--30219 Score: 197
Period size: 45 Copynumber: 3.3 Consensus size: 45
30062 AGGTTGTTTC
* * * *
30072 GTTTATTTTGAACAAGGTAACAAATAGTCTTTAATGGCTATTTTTA
1 GTTTAGTTTGAACATGGTATCAAATAGTCTTTCATGGCTA-TTTTA
*
30118 GTTTAGTTTGAACATGGTATCAAATAGTCTTTCATGGCTATTTGA
1 GTTTAGTTTGAACATGGTATCAAATAGTCTTTCATGGCTATTTTA
* * * * *
30163 TTTTAGTTTGAACATAGTTTCAAATAGTCTTTCATGTCTGTTTTA
1 GTTTAGTTTGAACATGGTATCAAATAGTCTTTCATGGCTATTTTA
30208 GTTTAGTTTGAA
1 GTTTAGTTTGAA
30220 TAAACAATGG
Statistics
Matches: 90, Mismatches: 12, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
45 54 0.60
46 36 0.40
ACGTcount: A:0.28, C:0.09, G:0.17, T:0.46
Consensus pattern (45 bp):
GTTTAGTTTGAACATGGTATCAAATAGTCTTTCATGGCTATTTTA
Found at i:30680 original size:19 final size:20
Alignment explanation
Indices: 30642--30684 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
30632 TTAGTTTCCC
*
30642 TTCATTACTTAGCAAAAATT
1 TTCACTACTTAGCAAAAATT
30662 TTCACTACTTAGC-AAAATT
1 TTCACTACTTAGCAAAAATT
30681 TTCA
1 TTCA
30685 TTATATAGCT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 10 0.45
20 12 0.55
ACGTcount: A:0.37, C:0.19, G:0.05, T:0.40
Consensus pattern (20 bp):
TTCACTACTTAGCAAAAATT
Found at i:30693 original size:19 final size:20
Alignment explanation
Indices: 30642--30687 Score: 76
Period size: 19 Copynumber: 2.4 Consensus size: 20
30632 TTAGTTTCCC
30642 TTCATTACTTAGCAAAAATT
1 TTCATTACTTAGCAAAAATT
*
30662 TTCACTACTTAGC-AAAATT
1 TTCATTACTTAGCAAAAATT
30681 TTCATTA
1 TTCATTA
30688 TATAGCTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
19 12 0.50
20 12 0.50
ACGTcount: A:0.37, C:0.17, G:0.04, T:0.41
Consensus pattern (20 bp):
TTCATTACTTAGCAAAAATT
Found at i:31456 original size:22 final size:22
Alignment explanation
Indices: 31401--31483 Score: 87
Period size: 22 Copynumber: 3.8 Consensus size: 22
31391 CCGGTTGTGC
* *
31401 TTATCAAAATTTTATAGTG-AG
1 TTATCAAAATTCTATAGGGAAG
* *
31422 ATTAACGAAATTCTATAGGGAAG
1 -TTATCAAAATTCTATAGGGAAG
* *
31445 TTATCAACATTCCATAGGGAAG
1 TTATCAAAATTCTATAGGGAAG
*
31467 TTATCAAAATTTTATAG
1 TTATCAAAATTCTATAG
31484 TATGGTTATC
Statistics
Matches: 49, Mismatches: 11, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
22 47 0.96
23 2 0.04
ACGTcount: A:0.40, C:0.10, G:0.16, T:0.35
Consensus pattern (22 bp):
TTATCAAAATTCTATAGGGAAG
Found at i:31491 original size:22 final size:22
Alignment explanation
Indices: 31466--31508 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
31456 CCATAGGGAA
*
31466 GTTATCAAAATTTTATAGTATG
1 GTTATCAAAATTTCATAGTATG
*
31488 GTTATCCAAATTTCATAGTAT
1 GTTATCAAAATTTCATAGTAT
31509 ACCAAATCAG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.35, C:0.09, G:0.12, T:0.44
Consensus pattern (22 bp):
GTTATCAAAATTTCATAGTATG
Found at i:31616 original size:22 final size:22
Alignment explanation
Indices: 31591--31642 Score: 68
Period size: 22 Copynumber: 2.4 Consensus size: 22
31581 ACATATCACG
* * *
31591 ATTTTATAGTGTGGTTATCAAA
1 ATTTCATAGTGTGGTGACCAAA
*
31613 ATTTCATAGTTTGGTGACCAAA
1 ATTTCATAGTGTGGTGACCAAA
31635 ATTTCATA
1 ATTTCATA
31643 TCAAAATTTT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.33, C:0.10, G:0.15, T:0.42
Consensus pattern (22 bp):
ATTTCATAGTGTGGTGACCAAA
Found at i:31685 original size:22 final size:22
Alignment explanation
Indices: 31641--31715 Score: 71
Period size: 22 Copynumber: 3.4 Consensus size: 22
31631 CAAAATTTCA
* * * *
31641 TATCAAAATTTTATAGTGTGGT
1 TATCAAAATTTCACAGGGAGGT
*
31663 TATCAAAGTTTCACAGGGAGGT
1 TATCAAAATTTCACAGGGAGGT
**
31685 TAT-AACAATTTCTTAGGGAGGT
1 TATCAA-AATTTCACAGGGAGGT
31707 TATCAAAAT
1 TATCAAAAT
31716 AATATAGCAA
Statistics
Matches: 43, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
21 2 0.05
22 39 0.91
23 2 0.05
ACGTcount: A:0.35, C:0.09, G:0.20, T:0.36
Consensus pattern (22 bp):
TATCAAAATTTCACAGGGAGGT
Found at i:32027 original size:21 final size:22
Alignment explanation
Indices: 32001--32055 Score: 69
Period size: 21 Copynumber: 2.5 Consensus size: 22
31991 CATTGGGAGT
* *
32001 TTATCAGAATTTTATAGGTA-A-
1 TTATCAAAATTTCATA-GTATAG
32022 TTATCAAAATTTCATAGTATAG
1 TTATCAAAATTTCATAGTATAG
32044 TTATCAAAATTT
1 TTATCAAAATTT
32056 AATAAAAATA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
20 3 0.10
21 15 0.50
22 12 0.40
ACGTcount: A:0.40, C:0.07, G:0.09, T:0.44
Consensus pattern (22 bp):
TTATCAAAATTTCATAGTATAG
Found at i:32764 original size:290 final size:290
Alignment explanation
Indices: 32243--32787 Score: 930
Period size: 290 Copynumber: 1.9 Consensus size: 290
32233 AAATGGACGG
* *
32243 TTCCAATTCCAGTTTCATATGTGTAGAATCTAACCGGAACCTTCCCAACAAAGATTTCGGTTCGT
1 TTCCAATTCCAGTTTCATATGTGTAGAATCTAACCGGAACCTTCCAAACAAAGATTTCGGTTCGA
* *
32308 GTTTTGGAACCAAAACATTTTAACGATTATGGTTTTAATTTGGTGACCACGGATCTGGTTCGGTT
66 GTTTTGGAACCAAAACATTTTAACGATTATGGTTTTAATTTGGTGACCACGGATCTGGTCCGATT
*
32373 CTACGATTCCAACTAAACCGTGGTCACCTCTACGACAATATCCTTCTCTTGGCTTTAGAATATTG
131 CTACGATTCCAACTAAACCGTGGTCACCTCTACGACAATATCCTTCTCTTAGCTTTAGAATATTG
32438 TTAATTACTTTACTAATTTTGTATTCTAAAAACATTGCCAATGTAAAAAAAAAAAAGAAAAAAAA
196 TTAATTACTTTACTAATTTTGTATTCTAAAAACATTGCCAATGTAAAAAAAAAAAA-AAAAAAAA
32503 GCTTAGACTACCACATTTATTCTAAGAACAT
260 GCTTAGACTACCACATTTATTCTAAGAACAT
* *
32534 TTCCAATTCCAGTTTTATATGTGTAGAATCTAACCGGAACCTTCCAAACAAAGATTTTGGTTC-A
1 TTCCAATTCCAGTTTCATATGTGTAGAATCTAACCGGAACCTTCCAAACAAAGATTTCGGTTCGA
* * * *
32598 GTTTTGGAATCAAAACATTTTAACGTTTCTGGTTTTAATTTGGTGACCACGTATCTGGTCCGATT
66 GTTTTGGAACCAAAACATTTTAACGATTATGGTTTTAATTTGGTGACCACGGATCTGGTCCGATT
* * *
32663 CTACGGTTCCTACTAAACCGTGGTCACCTCTACGATAATATCCTTCTCTTAGCTTTAGAATATTG
131 CTACGATTCCAACTAAACCGTGGTCACCTCTACGACAATATCCTTCTCTTAGCTTTAGAATATTG
* *
32728 TTAATTAGTTTACTAATTTTGTATTCTAAGAACATTGCCAATGTAAAAAAAAAAAAAAAA
196 TTAATTACTTTACTAATTTTGTATTCTAAAAACATTGCCAATGTAAAAAAAAAAAAAAAA
32788 GTTCAGACTA
Statistics
Matches: 238, Mismatches: 16, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
289 4 0.02
290 174 0.73
291 60 0.25
ACGTcount: A:0.33, C:0.19, G:0.14, T:0.35
Consensus pattern (290 bp):
TTCCAATTCCAGTTTCATATGTGTAGAATCTAACCGGAACCTTCCAAACAAAGATTTCGGTTCGA
GTTTTGGAACCAAAACATTTTAACGATTATGGTTTTAATTTGGTGACCACGGATCTGGTCCGATT
CTACGATTCCAACTAAACCGTGGTCACCTCTACGACAATATCCTTCTCTTAGCTTTAGAATATTG
TTAATTACTTTACTAATTTTGTATTCTAAAAACATTGCCAATGTAAAAAAAAAAAAAAAAAAAAG
CTTAGACTACCACATTTATTCTAAGAACAT
Found at i:33306 original size:111 final size:112
Alignment explanation
Indices: 33111--33341 Score: 428
Period size: 111 Copynumber: 2.1 Consensus size: 112
33101 GGAGTAGTAT
*
33111 GATATATAGAGAGGGAAATAGATATATAGATTTTTTTAACGAATGTAGCTCATAATTGCAATTTG
1 GATATATAGAGAGGGAAATAGATATATAGATTTTTTTAACGAATGTAGCTCAGAATTGCAATTTG
*
33176 GGCACTGCTTTCTAGTGGAATCTTCTGTGTTTGTTCCATTGTTGGAG
66 GGCACTGCTTTCTAGTGGAATCTTCTGTGCTTGTTCCATTGTTGGAG
33223 GATATATAGAGAGGGAAATAGATATATAGA-TTTTTTAACGAATGTAGCTCAGAATTGCAATTTG
1 GATATATAGAGAGGGAAATAGATATATAGATTTTTTTAACGAATGTAGCTCAGAATTGCAATTTG
33287 GGCACTGCTTTCTAGTGGAATCTTCTGTGCTTGTTCCATTGTTGGAG
66 GGCACTGCTTTCTAGTGGAATCTTCTGTGCTTGTTCCATTGTTGGAG
33334 GATGATAT
1 GAT-ATAT
33342 CGATGAATAT
Statistics
Matches: 116, Mismatches: 2, Indels: 2
0.97 0.02 0.02
Matches are distributed among these distances:
111 82 0.71
112 34 0.29
ACGTcount: A:0.28, C:0.11, G:0.24, T:0.37
Consensus pattern (112 bp):
GATATATAGAGAGGGAAATAGATATATAGATTTTTTTAACGAATGTAGCTCAGAATTGCAATTTG
GGCACTGCTTTCTAGTGGAATCTTCTGTGCTTGTTCCATTGTTGGAG
Found at i:33551 original size:170 final size:167
Alignment explanation
Indices: 33269--33606 Score: 613
Period size: 170 Copynumber: 2.0 Consensus size: 167
33259 AACGAATGTA
33269 GCTCAGAATTGCAATTTGGGCACTGCTTTCTAGTGGAATCTTCTGTGCTTGTTCCATTGTTGGAG
1 GCTCAGAATTGCAATTTGGGCACTGCTTTCTAGTGGAATCTTCTGTGCTTGTTCCATTGTTGGAG
* *
33334 GATGATATCGATGAATATGTCTTTGTGAGAAGTTAAACTTTATGTGGTGTCTTTTGTATTGGAAA
66 GATGATATCGATGAATATGTCTTTATGAGAAGTTAAACTTTATGTGGTGCCTTTTGTATTGG--A
33399 AAAAAAAGCCATCAATACTAGCTAGTTGTTAAGTGGGTGG
129 AAAAAAA-CCATCAATACTAGCTAGTTGTTAAGTGGGTGG
*
33439 GCTCAGAATTGCAATTTGGGCATTGCTTTCTAGTGGAATCTTCTGTGCTTGTTCCATTGTTGGAG
1 GCTCAGAATTGCAATTTGGGCACTGCTTTCTAGTGGAATCTTCTGTGCTTGTTCCATTGTTGGAG
*
33504 GATGATATCGATGAATATGTCTTTATGAGAAGTTAAGCTTTATGTGGTGCCTTTTGTATTGGAAA
66 GATGATATCGATGAATATGTCTTTATGAGAAGTTAAACTTTATGTGGTGCCTTTTGTATTGGAAA
33569 AAAAACCATCAATACTAGCTAGTTGTTAAGTGGGTGG
131 AAAAACCATCAATACTAGCTAGTTGTTAAGTGGGTGG
33606 G
1 G
33607 GGGAGGGGGG
Statistics
Matches: 164, Mismatches: 4, Indels: 3
0.96 0.02 0.02
Matches are distributed among these distances:
167 33 0.20
168 8 0.05
170 123 0.75
ACGTcount: A:0.25, C:0.12, G:0.25, T:0.37
Consensus pattern (167 bp):
GCTCAGAATTGCAATTTGGGCACTGCTTTCTAGTGGAATCTTCTGTGCTTGTTCCATTGTTGGAG
GATGATATCGATGAATATGTCTTTATGAGAAGTTAAACTTTATGTGGTGCCTTTTGTATTGGAAA
AAAAACCATCAATACTAGCTAGTTGTTAAGTGGGTGG
Done.