Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006519.1 Corchorus capsularis cultivar CVL-1 contig06540, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22343

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4707--4766
26
2.3
26
82
5
77
21
18
6
53
1.67
4707--4834
26
4.8
25
70
20
73
18
21
5
54
1.63
4856--4895
18
2.2
19
86
4
55
17
27
0
55
1.43
4874--4949
26
2.9
26
84
13
77
21
26
2
50
1.62
5400--5549
55
2.7
55
95
0
246
26
16
6
51
1.67
5537--5751
22
10.0
21
74
14
179
19
20
6
54
1.65
5537--5721
43
4.3
43
81
10
182
19
20
6
53
1.67
5538--5751
65
3.3
65
82
9
242
19
20
6
54
1.65
5790--5857
31
2.2
30
86
2
91
25
16
8
50
1.73
9605--9683
27
2.8
28
74
12
81
48
24
13
13
1.79
10271--10330
21
3.0
21
75
7
70
40
13
18
28
1.88
21476--21529
28
1.9
28
88
7
83
22
18
11
48
1.79
21476--21536
29
2.1
28
85
8
79
22
18
11
47
1.80
22300--22341
2
21.0
2
100
0
84
50
0
0
50
1.00

Tables:   1

The End!