Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01006522.1 Corchorus capsularis cultivar CVL-1 contig06543, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5347
ACGTcount: A:0.32, C:0.18, G:0.16, T:0.33


Found at i:2626 original size:2 final size:2

Alignment explanation


    Indices: 2615--2648  Score: 61
    Period size: 2  Copynumber: 17.5  Consensus size: 2

       2605 CATAATTAAT

                                                                
       2615 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T

       2649 TCAAATCTAT


Statistics
Matches: 31,  Mismatches: 0, Indels: 2
        0.94            0.00        0.06

Matches are distributed among these distances:
   1    1  0.03
   2   30  0.97

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
TA

Found at i:2730 original size:2 final size:2

Alignment explanation


    Indices: 2723--2749  Score: 54
    Period size: 2  Copynumber: 13.5  Consensus size: 2

       2713 CGAGACAACT

                                                    
       2723 TA TA TA TA TA TA TA TA TA TA TA TA TA T
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA T

       2750 TGTCTTGGCT


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   25  1.00

ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52


Consensus pattern (2 bp):   
TA

Done.