Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006523.1 Corchorus capsularis cultivar CVL-1 contig06544, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  34089

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1183--1428
131
1.9
131
89
2
386
37
12
2
47
1.56
3129--3183
18
3.1
18
80
19
71
50
0
0
49
1.00
3134--3165
15
2.1
16
94
5
57
53
0
0
46
1.00
6135--6212
41
1.9
41
89
0
120
26
16
17
38
1.92
8668--8724
21
2.8
20
78
5
60
54
3
0
42
1.17
13750--13856
30
3.5
30
96
1
187
26
10
27
36
1.88
13830--13936
45
2.4
45
96
0
196
26
7
27
39
1.83
13830--13959
45
2.9
45
85
8
176
23
8
26
40
1.83
15588--15637
16
3.3
16
67
16
52
54
18
0
28
1.44
16189--16451
107
2.5
106
83
2
325
42
9
7
40
1.67
22837--22888
15
3.4
15
78
5
50
51
23
15
9
1.72
22838--22901
16
4.1
16
75
4
58
50
26
14
9
1.73
24543--24593
25
2.0
25
85
11
68
52
1
7
37
1.42
25637--25702
31
2.1
31
88
5
98
31
16
4
46
1.67
30914--30972
29
2.0
29
100
0
118
59
16
3
20
1.51

Tables:   1

The End!