genome.fa.s6527.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006527.1 Corchorus capsularis cultivar CVL-1 contig06548, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  9357

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1156--1202	13	3.5	13	72	16	51	12	25	0	61	1.31
1275--1479	21	9.9	21	75	13	156	22	20	5	51	1.69
1302--1381	35	2.2	35	82	4	97	22	23	3	50	1.65
1338--1401	15	4.3	15	70	18	53	21	17	4	56	1.59
1339--1560	22	10.2	22	73	15	158	21	20	5	53	1.65
1333--1560	44	5.3	42	77	11	194	21	20	5	53	1.65
1265--1507	86	2.9	85	76	15	215	22	20	5	51	1.68
1283--1502	108	2.1	100	83	9	264	22	20	5	51	1.67
1489--1545	15	3.9	15	75	11	64	21	15	5	57	1.57
1491--1554	29	2.2	28	83	10	76	20	20	4	54	1.62
1535--1622	35	2.5	35	94	0	149	18	25	3	53	1.60
1549--1710	88	1.8	88	88	5	247	18	22	3	55	1.56
1637--1780	35	4.1	34	88	5	182	19	24	3	52	1.61
1535--1903	158	2.3	158	97	0	686	19	23	2	54	1.58
1707--1868	88	1.8	88	86	5	238	19	22	3	54	1.57
1795--2164	7	51.6	7	65	15	105	19	23	2	55	1.55
1795--2018	35	6.2	35	79	12	215	19	23	2	54	1.55
1535--2000	158	2.9	155	90	5	645	18	23	2	54	1.56
1828--1990	76	2.2	76	92	1	274	17	23	1	56	1.51
2037--2164	36	3.5	35	84	8	159	16	25	2	56	1.52
2262--2352	32	2.8	32	81	3	94	23	19	2	54	1.55
2316--2497	80	2.3	80	88	0	265	24	20	5	49	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2337--2480	40	3.6	39	72	12	130	25	20	6	47	1.73
6708--6777	25	2.8	25	95	0	122	40	27	12	20	1.88
8118--8194	33	2.3	33	88	0	109	7	28	41	22	1.81

Tables:   1

The End!