Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006534.1 Corchorus capsularis cultivar CVL-1 contig06555, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  39256

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1057--1109
25
2.1
25
86
6
72
0
24
0
75
0.80
1746--1799
3
19.3
3
83
14
55
0
24
0
75
0.80
1744--1806
11
5.7
10
82
14
63
0
23
0
76
0.79
1742--1812
33
2.2
33
87
7
101
0
22
0
77
0.77
8017--8072
12
5.0
11
74
10
51
39
0
3
57
1.16
8412--8453
21
2.0
21
100
0
84
23
38
28
9
1.86
9401--9492
27
3.4
27
66
19
84
14
10
19
55
1.68
9399--9516
53
2.2
52
82
8
141
14
11
18
55
1.69
9622--9678
22
2.8
21
82
15
66
29
1
21
47
1.61
12355--12389
2
17.5
2
100
0
70
51
0
0
48
1.00
15884--15908
2
12.5
2
100
0
50
48
0
0
52
1.00
16485--16554
35
2.0
35
100
0
140
45
5
37
11
1.64
23682--23863
26
7.0
25
73
12
152
26
21
1
50
1.58
23682--23863
52
3.5
52
81
5
242
26
21
1
50
1.58
23838--23877
19
2.2
18
86
13
55
22
25
0
52
1.47
23892--23937
23
2.0
22
83
4
56
30
10
2
56
1.46
23980--24132
38
4.1
37
79
11
134
28
16
5
49
1.69
24007--24135
38
3.4
36
84
6
150
27
17
5
50
1.67
24104--24169
29
2.3
29
83
0
87
24
18
10
46
1.80
29209--29258
18
2.7
18
82
17
50
14
20
44
22
1.86
31589--31637
21
2.3
21
82
6
55
14
28
16
40
1.87
34477--34525
21
2.3
21
85
0
62
10
32
28
28
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34874--35062
37
5.1
37
96
0
351
24
14
11
50
1.75
36017--36075
31
1.9
31
89
6
93
13
32
6
47
1.69
36073--36255
33
5.5
33
92
1
269
15
42
31
10
1.80
37417--37447
4
7.5
4
96
3
53
77
0
0
22
0.77

Tables:   1

The End!