Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006537.1 Corchorus capsularis cultivar CVL-1 contig06558, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  38436

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
526--572
22
2.1
22
96
0
85
23
14
31
29
1.95
7543--7574
2
16.0
2
100
0
64
50
0
0
50
1.00
11198--11231
12
2.9
12
86
4
52
76
0
23
0
0.79
12050--12138
35
2.5
35
92
0
151
34
6
17
40
1.77
12120--12159
21
1.9
21
94
0
71
45
0
15
40
1.46
12085--12202
56
2.1
56
95
0
209
38
5
16
39
1.73
12002--12228
91
2.5
91
90
0
357
37
5
17
39
1.73
12120--12167
21
2.3
21
88
0
69
45
4
12
37
1.61
12141--12291
35
4.3
35
87
1
205
39
7
14
38
1.74
12141--12285
69
2.1
70
89
6
224
38
7
15
38
1.76
15362--15411
14
3.7
13
80
17
57
42
8
12
38
1.71
17645--18072
54
7.8
54
83
7
517
30
16
21
31
1.95
18094--18371
43
6.9
43
72
16
184
26
16
26
30
1.97
18094--18223
42
3.1
39
79
10
127
26
16
25
31
1.97
18200--18349
35
4.1
35
78
13
129
26
17
25
30
1.97
18158--18380
78
2.9
78
83
1
277
27
17
26
29
1.98
18359--18904
182
3.0
180
86
4
719
27
15
25
31
1.96
22499--22538
21
1.9
21
89
0
62
47
0
12
40
1.41
22520--22608
35
2.5
35
94
0
151
38
5
17
38
1.74
22555--22672
56
2.1
56
93
0
200
39
5
16
38
1.71
22472--22689
91
2.4
91
93
0
382
38
5
16
38
1.74
22611--22701
35
2.6
34
84
8
130
37
6
17
38
1.76
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
22636--22689
19
3.0
19
71
15
60
35
5
20
38
1.76
22989--23093
39
2.6
40
73
10
106
25
20
22
31
1.98
27519--27617
48
2.1
48
100
0
198
41
2
24
32
1.66
33730--33794
31
2.1
31
100
0
130
20
15
23
41
1.89

Tables:   1

The End!