Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006546.1 Corchorus capsularis cultivar CVL-1 contig06567, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58758

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5617--5645
12
2.3
13
94
5
51
31
0
0
68
0.89
7741--7770
2
15.5
2
93
6
53
50
0
0
50
1.00
9225--9253
2
14.5
2
100
0
58
0
48
0
51
1.00
13457--13493
20
1.9
20
88
5
58
48
2
0
48
1.15
17423--17447
2
12.5
2
100
0
50
48
0
0
52
1.00
17810--17879
23
3.0
23
93
0
122
11
35
21
31
1.89
18759--18805
23
2.0
23
95
0
85
10
34
21
34
1.88
20531--20568
11
3.5
11
85
10
51
57
2
0
39
1.12
25409--25451
19
2.3
19
95
0
77
32
16
34
16
1.91
31556--31589
11
3.2
10
84
15
50
50
17
2
29
1.61
33152--33186
6
5.8
6
100
0
70
34
14
0
51
1.42
33709--33759
23
2.3
21
78
18
59
17
29
45
7
1.77
33712--33756
23
2.0
23
86
8
65
17
28
46
6
1.73
37028--37067
20
2.0
20
95
0
71
62
10
0
27
1.27
39022--39055
11
3.2
10
84
15
50
50
17
2
29
1.61
41034--41064
16
1.9
16
100
0
62
38
6
25
29
1.81
42909--42968
21
2.9
21
84
0
66
16
35
5
43
1.70
46429--46453
13
1.9
13
100
0
50
40
4
8
48
1.51
47852--47884
17
1.9
17
93
0
57
3
39
0
57
1.14
48985--49086
50
2.0
51
92
3
170
62
8
12
15
1.53
48212--49859
826
2.0
820
88
2
2426
36
16
17
29
1.92
51218--51270
27
1.9
28
92
3
90
37
5
9
47
1.60
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48088--52917
770
6.2
764
83
7
5459
34
16
17
31
1.93
55277--55403
44
2.9
44
91
0
209
23
22
10
43
1.84
58208--58261
27
2.0
27
89
3
83
59
11
12
16
1.61
58454--58497
21
2.1
21
87
8
63
18
34
9
38
1.82

Tables:   1

The End!