Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006559.1 Corchorus capsularis cultivar CVL-1 contig06580, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59030

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
571--607
15
2.5
15
95
0
65
16
21
24
37
1.93
3436--3460
11
2.3
11
100
0
50
92
0
8
0
0.40
3657--3708
25
2.0
26
88
3
79
44
25
23
7
1.79
3825--3884
29
2.1
29
87
0
84
48
23
10
18
1.78
3853--3948
46
2.1
46
80
3
104
46
23
12
16
1.81
22358--22502
39
3.6
40
84
7
197
42
26
10
20
1.84
22358--22517
81
2.0
81
90
4
252
40
25
11
23
1.88
26488--26573
21
4.1
21
87
0
127
36
22
12
29
1.91
26442--26699
132
2.0
132
88
0
381
32
22
13
31
1.92
26617--26743
21
6.0
21
75
9
98
41
19
11
26
1.86
26620--26744
42
3.0
41
80
2
142
42
18
12
27
1.85
26802--26863
21
2.9
21
82
2
70
38
19
12
29
1.89
26694--26923
122
1.9
122
83
5
295
36
21
12
30
1.90
28117--28159
2
22.5
2
86
9
63
46
0
0
53
1.00
29204--29270
26
2.5
26
95
2
116
17
13
32
35
1.89
31788--31872
37
2.3
37
85
2
116
49
12
15
22
1.78
32007--32047
16
2.8
14
82
13
55
26
14
7
51
1.69
43636--43671
19
1.9
18
88
5
54
41
2
22
33
1.68
48469--48525
21
2.7
21
80
2
69
31
1
31
35
1.68
48888--48913
2
13.0
2
100
0
52
50
0
0
50
1.00
50072--50227
55
2.7
58
79
11
158
35
14
16
33
1.88
50275--50390
60
1.9
59
86
10
164
34
14
14
36
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50298--50420
60
2.0
60
83
6
151
37
13
13
35
1.84
51076--51386
146
2.1
149
83
4
380
40
7
17
34
1.77
51453--51515
32
2.0
32
93
0
108
26
4
31
36
1.78
56180--56221
22
1.9
22
95
0
75
40
4
11
42
1.63
56173--56227
22
2.5
22
84
3
74
40
5
9
45
1.59
57711--57746
9
3.6
10
88
11
56
80
2
0
16
0.83

Tables:   1

The End!