Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006560.1 Corchorus capsularis cultivar CVL-1 contig06581, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  106878

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
196--397
110
1.8
111
89
4
316
19
13
23
43
1.86
763--3614
950
3.0
950
99
0
5616
29
21
16
32
1.95
4187--4237
24
2.1
25
85
3
68
70
5
5
17
1.28
4174--4239
21
3.2
21
71
14
57
66
6
7
19
1.38
6732--7173
166
2.7
165
85
4
570
40
14
14
30
1.86
7915--7973
30
1.9
31
86
3
84
40
10
13
35
1.78
11352--11384
15
2.2
15
100
0
66
27
12
9
51
1.69
24200--24234
15
2.3
15
85
0
52
8
65
8
17
1.44
48928--49660
244
3.0
244
94
0
1295
27
23
18
29
1.98
61387--61443
6
9.7
6
92
3
98
36
0
63
0
0.95
85149--85235
42
2.1
42
97
0
165
26
6
17
49
1.71
92917--92992
32
2.4
32
100
0
152
30
23
25
21
1.99
94372--94402
1
31.0
1
100
0
62
0
0
0
100
0.00
96214--96240
3
9.0
3
100
0
54
66
33
0
0
0.92

Tables:   1

The End!