Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006565.1 Corchorus capsularis cultivar CVL-1 contig06586, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22334

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1552--1617
30
2.2
30
94
0
114
30
18
18
33
1.94
2843--2885
23
2.0
23
86
9
63
32
9
13
44
1.76
3081--3165
42
2.0
42
97
0
161
20
17
21
41
1.91
3922--3982
26
2.3
26
94
0
104
37
6
13
42
1.70
7910--7934
5
5.0
5
100
0
50
40
0
0
60
0.97
8433--8497
31
2.1
31
85
2
87
35
9
10
44
1.71
8828--8952
47
2.6
49
82
7
130
54
13
2
29
1.52
9543--9596
19
3.0
18
78
7
65
59
1
0
38
1.08
12005--12072
27
2.5
28
83
7
95
29
13
23
33
1.93
17804--17995
37
5.2
37
86
5
264
47
8
18
25
1.77
17965--18354
71
5.4
71
92
0
627
43
8
23
24
1.81
18319--18737
37
11.1
36
76
12
290
46
9
19
25
1.80
18325--18740
73
5.5
73
72
15
238
46
9
18
25
1.80
18754--19112
76
4.7
76
98
0
700
45
10
20
23
1.83
18754--19205
228
2.0
227
87
6
657
45
10
19
24
1.82
19160--19258
36
2.8
36
81
9
105
51
11
11
26
1.70
19268--19603
37
9.2
37
87
3
457
40
8
29
22
1.83
19447--19507
18
3.3
18
65
13
52
42
4
32
19
1.73
19610--19803
37
5.3
37
93
1
304
39
10
23
27
1.87
19575--19803
74
3.1
74
85
6
218
39
10
23
27
1.87
19575--19803
111
2.1
109
81
10
270
39
10
23
27
1.87
19615--19844
110
2.1
111
85
4
304
40
10
21
26
1.86

Tables:   1

The End!