Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01006567.1 Corchorus capsularis cultivar CVL-1 contig06588, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5320
ACGTcount: A:0.32, C:0.17, G:0.24, T:0.27


Found at i:5246 original size:38 final size:39

Alignment explanation


    Indices: 5179--5320  Score: 232
    Period size: 39  Copynumber: 3.7  Consensus size: 39

       5169 TGATTGTTTT

                                    *              
       5179 TCTCTGTTTAGAGTTTTCATTTAAATAAACCTGCTCAGG
          1 TCTCTGTTTAGAGTTTTCATTTAAGTAAACCTGCTCAGG

                 *              *                  
       5218 TCTCTATTTAGAG-TTTCATGTAAGTAAACCTGCTCAGG
          1 TCTCTGTTTAGAGTTTTCATTTAAGTAAACCTGCTCAGG

                                            *  *   
       5256 TCTCTGTTTAGAGTTTTCATTTAAGTAAACCTACTTAGG
          1 TCTCTGTTTAGAGTTTTCATTTAAGTAAACCTGCTCAGG

                                      
       5295 TCTCTGTTTAGAGTTTTCATTTAAGT
          1 TCTCTGTTTAGAGTTTTCATTTAAGT


Statistics
Matches: 95,  Mismatches: 7, Indels: 2
        0.91            0.07        0.02

Matches are distributed among these distances:
  38   35  0.37
  39   60  0.63

ACGTcount: A:0.25, C:0.16, G:0.16, T:0.43


Consensus pattern (39 bp):   
TCTCTGTTTAGAGTTTTCATTTAAGTAAACCTGCTCAGG
Done.