Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006568.1 Corchorus capsularis cultivar CVL-1 contig06589, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  111488

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4912--4941
2
15.0
2
100
0
60
50
0
0
50
1.00
5834--5892
30
2.0
30
100
0
118
40
11
3
44
1.58
7038--7084
23
2.0
23
92
8
78
14
14
34
36
1.88
9012--9037
1
26.0
1
100
0
52
100
0
0
0
0.00
9205--9252
23
2.1
23
100
0
96
20
31
22
25
1.98
12326--12360
16
2.2
16
94
0
61
60
14
5
20
1.54
17439--17476
19
2.0
19
94
0
67
34
10
18
36
1.85
20878--20936
28
2.1
28
90
0
91
45
27
15
11
1.81
25537--25571
3
11.0
3
88
11
52
68
0
31
0
0.90
25538--25571
7
5.1
7
92
7
54
70
0
29
0
0.87
30929--30959
15
2.0
16
93
6
55
58
0
6
35
1.24
32031--32214
94
2.0
92
96
2
341
43
9
13
33
1.77
32565--32644
26
3.1
26
78
10
110
48
10
11
30
1.71
32563--32641
25
3.1
24
78
10
86
48
10
11
30
1.72
36649--36679
6
5.3
6
92
7
55
35
16
0
48
1.46
37793--37922
65
2.0
65
98
0
251
29
19
5
46
1.72
58539--58702
75
2.2
75
92
0
265
22
25
14
38
1.91
58751--58782
4
8.0
4
92
0
55
71
0
3
25
1.00
60552--60591
16
2.5
16
95
0
71
5
12
35
47
1.63
60558--60617
26
2.3
25
91
5
93
6
11
33
48
1.66
60552--60620
16
4.7
15
73
21
67
5
13
36
44
1.67
60611--60655
17
2.6
17
96
0
81
4
24
48
22
1.68
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61433--61473
16
2.6
16
92
0
73
12
12
39
36
1.80
69083--69112
13
2.3
13
100
0
60
50
16
13
20
1.78
70715--70764
15
3.2
15
83
8
55
62
28
2
8
1.35
70697--70817
64
1.9
64
94
0
215
56
23
7
13
1.62
70780--70820
11
3.5
12
81
15
50
58
29
2
9
1.43
73245--73289
20
2.2
21
88
4
65
62
31
2
4
1.27
74334--74422
45
2.0
45
95
0
160
29
19
31
20
1.97
75468--75840
196
1.9
197
85
4
520
29
13
16
40
1.87
79533--79592
32
1.9
31
83
6
77
31
30
11
26
1.92
81145--81188
11
4.0
11
87
0
61
50
6
2
40
1.42
81141--81187
22
2.1
22
92
0
76
48
6
2
42
1.40
81146--81194
11
4.5
11
80
10
55
48
4
4
42
1.40
92033--92097
30
2.1
31
88
2
96
29
20
3
47
1.65
92916--92967
26
2.0
27
88
3
79
55
23
7
13
1.63
93216--93799
22
27.1
21
67
15
153
39
10
14
35
1.80
93308--93515
104
2.0
105
81
5
242
41
8
14
35
1.77
93245--93799
44
12.8
44
67
16
189
39
10
14
35
1.80
97631--97664
3
11.3
3
100
0
68
67
0
0
32
0.91
105537--105627
30
3.1
30
90
1
148
18
21
14
45
1.85
105707--105845
30
4.6
30
87
4
174
15
19
21
43
1.88
105912--105973
30
2.0
31
84
3
81
45
12
20
20
1.84
106488--106512
12
2.1
12
100
0
50
36
24
8
32
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
111225--111264
16
2.4
18
76
16
50
52
35
7
5
1.51

Tables:   1

The End!