Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006572.1 Corchorus capsularis cultivar CVL-1 contig06593, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54585

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
15802--15846
9
4.6
10
89
10
67
35
6
0
57
1.25
15802--15846
19
2.3
19
92
3
72
35
6
0
57
1.25
17242--17274
1
33.0
1
100
0
66
100
0
0
0
0.00
18148--18208
24
2.3
26
81
16
81
37
31
0
31
1.58
18262--18331
34
2.1
34
91
0
113
47
11
12
28
1.77
18296--18376
39
2.0
40
86
6
112
44
13
11
30
1.79
18482--18513
2
16.0
2
93
0
55
50
3
0
46
1.17
19243--19278
6
5.7
6
87
12
54
13
2
2
80
0.93
19998--20046
17
2.8
18
81
6
57
30
0
8
61
1.25
20069--20118
24
2.1
24
96
0
91
36
6
8
50
1.57
28382--28420
20
1.9
21
94
5
71
15
5
25
53
1.62
34380--34416
2
19.0
2
94
5
67
51
0
0
48
1.00
35314--35355
21
2.0
22
85
4
59
40
2
7
50
1.43
36585--36628
6
7.3
6
94
0
79
0
47
15
36
1.46
39666--39732
35
1.9
35
96
0
125
23
26
26
22
2.00
40283--40320
19
2.0
19
94
0
67
39
18
21
21
1.93
41447--41485
19
2.0
20
85
14
55
53
5
5
35
1.45
41986--42014
5
5.8
5
100
0
58
0
17
0
82
0.66
42825--44148
329
4.0
327
79
7
1333
38
14
13
33
1.85
42825--44210
334
4.2
327
79
8
1342
38
14
12
33
1.84
44483--44576
16
5.9
16
77
10
79
9
19
36
35
1.84
44484--44591
32
3.4
30
71
8
81
9
20
37
33
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44812--44893
42
2.0
42
95
0
146
36
4
19
39
1.73
45428--45575
16
9.2
16
74
8
122
10
18
36
33
1.86
45426--45575
48
3.1
47
78
9
160
10
19
36
34
1.86
46244--46323
41
2.0
40
88
7
119
45
15
0
40
1.46
46728--47010
84
3.4
82
86
4
363
39
25
11
24
1.88
46727--46986
43
6.2
41
78
5
243
38
25
10
25
1.88
50022--50175
79
1.9
79
92
5
254
49
14
7
28
1.71
52673--52749
40
2.0
38
89
5
118
31
5
20
42
1.74
53589--53635
20
2.3
20
96
0
85
14
34
38
12
1.85

Tables:   1

The End!