Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01006581.1 Corchorus capsularis cultivar CVL-1 contig06602, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1962
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.29


Found at i:1232 original size:13 final size:13

Alignment explanation


    Indices: 1199--1233  Score: 61
    Period size: 13  Copynumber: 2.7  Consensus size: 13

       1189 TGATCTGTCT

                   *     
       1199 CTGAGATACGTAC
          1 CTGAGATCCGTAC

                         
       1212 CTGAGATCCGTAC
          1 CTGAGATCCGTAC

                     
       1225 CTGAGATCC
          1 CTGAGATCC

       1234 CGCCATGGCT


Statistics
Matches: 21,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  13   21  1.00

ACGTcount: A:0.26, C:0.29, G:0.23, T:0.23


Consensus pattern (13 bp):   
CTGAGATCCGTAC
Done.