Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01006586.1 Corchorus capsularis cultivar CVL-1 contig06607, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 13626
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.30


Found at i:4217 original size:13 final size:13

Alignment explanation


    Indices: 4199--4224  Score: 52
    Period size: 13  Copynumber: 2.0  Consensus size: 13

       4189 AGCATTGCTC

                         
       4199 GAAGTTACTTTAT
          1 GAAGTTACTTTAT

                         
       4212 GAAGTTACTTTAT
          1 GAAGTTACTTTAT

       4225 AAAGATTGGC


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   13  1.00

ACGTcount: A:0.31, C:0.08, G:0.15, T:0.46


Consensus pattern (13 bp):   
GAAGTTACTTTAT
Done.