Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01006588.1 Corchorus capsularis cultivar CVL-1 contig06609, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1868
ACGTcount: A:0.24, C:0.19, G:0.17, T:0.40
Found at i:329 original size:154 final size:154
Alignment explanation
Indices: 2--1075 Score: 1515
Period size: 154 Copynumber: 6.9 Consensus size: 154
1 T
* *
2 TTTTGATGAGATTAGTCCATTGTGAAGTTTTTTGCTCATTTTAGAACACTTGTTATTTCGGGGCC
1 TTTTGATGAGATTAGTCCATTGTGAAGTTTTTAGCTCA-TTCAGAACACTTGTTATTTC-GGGCC
* * *
67 TTTTCGGGGCCCATTAGTTCTGTTTTGAATCGTCTTAAATTTGGCAAACCTACAAAGCTTTTTCT
64 -TTTCGGGGCCCATTAGTGCTGTTTTGAATCGTCTTCAATTTGCCAAACC-ACAAAGC-TTTTCT
* * *
132 TTTAATTGTTTACGGCCTAACTATAATCA
126 TTCAATTGTTTACGACCTAACTATAATTA
* * *
161 TTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGGTCATTCAGAACACTTGTTATTTCGGGCCTT
1 TTTTGATGAGATTAGTCCATTGTGAAGTTTTTAGCTCATTCAGAACACTTGTTATTTCGGGCCTT
* *
226 TCGGGGCCCATTAGTGCTGTTTTGAATCGTCTTCTATTTGCCAAACCACAAAG-TATTTCTATCA
66 TCGGGGCCCATTAGTGCTGTTTTGAATCGTCTTCAATTTGCCAAACCACAAAGCT-TTTCTTTCA
*
290 ATTGTTTACGACCTAACTATAATCA
130 ATTGTTTACGACCTAACTATAATTA
*
315 TTTTGGTGAGATTAGTCC-TCTGTGAAGTTTTTAGCTCATTCAGAACACTTGTTATTTCGGGCCT
1 TTTTGATGAGATTAGTCCAT-TGTGAAGTTTTTAGCTCATTCAGAACACTTGTTATTTCGGGCCT
* * * *
379 TTCGAGGCCGAATAGTGCTGTTTTGAATCGACTTCAATTTGCCAAACCACAAAGCTTTTCTTTCA
65 TTCGGGGCCCATTAGTGCTGTTTTGAATCGTCTTCAATTTGCCAAACCACAAAGCTTTTCTTTCA
*
444 ATTGTTTACGACCTAACCATAATTA
130 ATTGTTTACGACCTAACTATAATTA
* * * * *
469 TTTTGATAAGATTAGACCATTTTGAAGTTTTTAGCACATTCAGAACACTTGTTATTTCAGGCCTT
1 TTTTGATGAGATTAGTCCATTGTGAAGTTTTTAGCTCATTCAGAACACTTGTTATTTCGGGCCTT
* * *
534 TTGGGGCCCATTATTGCTGTTTTGAATCGTCTTCGATTTAG-CAAACCACAAAGCTTTTCTTTCA
66 TCGGGGCCCATTAGTGCTGTTTTGAATCGTCTTCAATTT-GCCAAACCACAAAGCTTTTCTTTCA
*
598 ATTGTTTACGACCTAACTATAGTTA
130 ATTGTTTACGACCTAACTATAATTA
* * * *
623 TTTTGATGAGATTAGTCCATTGTAAAGTTTTTAGTTCACTTTAGAACACTAGTTATTTCGGGCCT
1 TTTTGATGAGATTAGTCCATTGTGAAGTTTTTAGCTCA-TTCAGAACACTTGTTATTTCGGGCCT
* * * * * *
688 TTCGGAGACCATTACTGCTGTTTTGAATCGTCTTCGATTTGGCAAACCACAAAGCTTTTCTTTCC
65 TTCGGGGCCCATTAGTGCTGTTTTGAATCGTCTTCAATTTGCCAAACCACAAAGCTTTTCTTTCA
* * *
753 ATAGTTTATGGCCTAACTATAATTA
130 ATTGTTTACGACCTAACTATAATTA
** * * * *
778 TTTTGATGAGATTAGTCTTTTCTGAAGTTTCTATCTCATTCAGAACACTTATTATTTCGGGCCTT
1 TTTTGATGAGATTAGTCCATTGTGAAGTTTTTAGCTCATTCAGAACACTTGTTATTTCGGGCCTT
* * *
843 TCGGGGCCCATTATTGCTGTTTTGAATCGTCTTCGATTTACCAAACCACAAAGCTTTTCTTTCAA
66 TCGGGGCCCATTAGTGCTGTTTTGAATCGTCTTCAATTTGCCAAACCACAAAGCTTTTCTTTCAA
* *
908 TTGTTTACAACCTAACTATATTTA
131 TTGTTTACGACCTAACTATAATTA
* *
932 TTTTGATGAGATTAGTCCATTGTGAAGTTTTTTGCTCATTTAGAACACTTGTTATTTCGGGCCTT
1 TTTTGATGAGATTAGTCCATTGTGAAGTTTTTAGCTCATTCAGAACACTTGTTATTTCGGGCCTT
* * *
997 TCGGGGCCCATTAGTGCTGTTTTGAATCGTCTTAAATTTGGCAAACCACAAAGCTTTTCTTTTAA
66 TCGGGGCCCATTAGTGCTGTTTTGAATCGTCTTCAATTTGCCAAACCACAAAGCTTTTCTTTCAA
*
1062 TTGTTTACGGCCTA
131 TTGTTTACGACCTA
1076 GTCCACTGTG
Statistics
Matches: 816, Mismatches: 92, Indels: 19
0.88 0.10 0.02
Matches are distributed among these distances:
153 1 0.00
154 570 0.70
155 142 0.17
156 45 0.06
157 5 0.01
158 19 0.02
159 34 0.04
ACGTcount: A:0.24, C:0.19, G:0.17, T:0.40
Consensus pattern (154 bp):
TTTTGATGAGATTAGTCCATTGTGAAGTTTTTAGCTCATTCAGAACACTTGTTATTTCGGGCCTT
TCGGGGCCCATTAGTGCTGTTTTGAATCGTCTTCAATTTGCCAAACCACAAAGCTTTTCTTTCAA
TTGTTTACGACCTAACTATAATTA
Found at i:983 original size:463 final size:462
Alignment explanation
Indices: 2--1868 Score: 2520
Period size: 463 Copynumber: 4.1 Consensus size: 462
1 T
* * *
2 TTTTGATGAGATTAGTCCATTGTGAAGTTTTTTGCTCATTTTAGAACACTTGTTATTTCGGGGCC
1 TTTTGATGAGATTAGTCCATTGTGAAGTTTTTAGCACA-TTCAGAACACTTGTTATTTC-GGGCC
*
67 TTTTCGGGGCCCATTAGTT-CTGTTTTGAATCGTCTTAAATTTGGCAAACCTACAAAGCTTTTTC
64 TTTT-GGGGCCCATTA-TTGCTGTTTTGAATCGTCTTAAATTTAGCAAACC-ACAAAGC-TTTTC
* * * * *
131 TTTTAATTGTTTACGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGG
125 TTTCAATTGTTTACGACCTAACTATAGTTATTTTGATGAGATTAGTCCACTGTGAAGTTTTTAGG
*
196 TCATTCAGAACACTTGTTATTTCGGGCCTTTCGGGGCCCATTAGTGCTGTTTTGAATCGTCTTCT
190 TCATTCAGAACACTTGTTATTTCGGGCCTTTCGGGGCCCATTAGTGCTGTTTTGAATCGTCTTCG
*
261 ATTTGCCAAACCACAAAG-TATTTCTATCAATTGTTTACGACCTAACTATAATCATTTTGGTGAG
255 ATTTGCCAAACCACAAAGCT-TTTCTATCAATTGTTTACGACCTAACTATAATCATTTTGATGAG
*
325 ATTAGTCCTCTGTGAAGTTTTTAGCTCATTCAGAACACTTGTTATTTCGGGCCTTTCGAGGCCGA
319 ATTAGTCCTCTGTGAAGTTTTTAGCTCATTCAGAACACTTGTTATTTCGGGCCTTTCGAGGCCCA
* *
390 ATAGTGCTGTTTTGAATCGACTTCAATTTGCCAAACCACAAAGCTTTTCTTTCAATTGTTTACGA
384 ATAGTGCTGTTTTGAATCGACTTCAATTTACCAAACCACAAAGCTTTTCTTTCAATTGTTTACAA
455 CCTAACCATAATTA
449 CCTAACCATAATTA
* * * *
469 TTTTGATAAGATTAGACCATTTTGAAGTTTTTAGCACATTCAGAACACTTGTTATTTCAGGCCTT
1 TTTTGATGAGATTAGTCCATTGTGAAGTTTTTAGCACATTCAGAACACTTGTTATTTCGGGCCTT
**
534 TTGGGGCCCATTATTGCTGTTTTGAATCGTCTTCGATTTAGCAAACCACAAAGCTTTTCTTTCAA
66 TTGGGGCCCATTATTGCTGTTTTGAATCGTCTTAAATTTAGCAAACCACAAAGCTTTTCTTTCAA
* * *
599 TTGTTTACGACCTAACTATAGTTATTTTGATGAGATTAGTCCATTGTAAAGTTTTTAGTTCACTT
131 TTGTTTACGACCTAACTATAGTTATTTTGATGAGATTAGTCCACTGTGAAGTTTTTAGGTCA-TT
* * * * *
664 TAGAACACTAGTTATTTCGGGCCTTTCGGAGACCATTACTGCTGTTTTGAATCGTCTTCGATTTG
195 CAGAACACTTGTTATTTCGGGCCTTTCGGGGCCCATTAGTGCTGTTTTGAATCGTCTTCGATTTG
* * * * * * *
729 GCAAACCACAAAGCTTTTCTTTCCATAGTTTATGGCCTAACTATAATTATTTTGATGAGATTAGT
260 CCAAACCACAAAGCTTTTCTATCAATTGTTTACGACCTAACTATAATCATTTTGATGAGATTAGT
* * * * * * * * *
794 CTTTTCTGAAGTTTCTATCTCATTCAGAACACTTATTATTTCGGGCCTTTCGGGGCCCATTATTG
325 CCTCTGTGAAGTTTTTAGCTCATTCAGAACACTTGTTATTTCGGGCCTTTCGAGGCCCAATAGTG
* *
859 CTGTTTTGAATCGTCTTCGATTTACCAAACCACAAAGCTTTTCTTTCAATTGTTTACAACCTAAC
390 CTGTTTTGAATCGACTTCAATTTACCAAACCACAAAGCTTTTCTTTCAATTGTTTACAACCTAAC
* *
924 TATATTTA
455 CATAATTA
* * *
932 TTTTGATGAGATTAGTCCATTGTGAAGTTTTTTGCTCATTTAGAACACTTGTTATTTCGGGCCTT
1 TTTTGATGAGATTAGTCCATTGTGAAGTTTTTAGCACATTCAGAACACTTGTTATTTCGGGCCTT
* * * *
997 TCGGGGCCCATTAGTGCTGTTTTGAATCGTCTTAAATTTGGCAAACCACAAAGCTTTTCTTTTAA
66 TTGGGGCCCATTATTGCTGTTTTGAATCGTCTTAAATTTAGCAAACCACAAAGCTTTTCTTTCAA
*
1062 TTGTTTACG-GC---C--------------------TAGTCCACTGTGAAGTTTTTAGGTCATTC
131 TTGTTTACGACCTAACTATAGTTATTTTGATGAGATTAGTCCACTGTGAAGTTTTTAGGTCATTC
* *
1103 AGAACACTTGTTATTTCGGGCCTTTCGGGGCCTATTAGTGCTGTTTTGAATCGTCTTCTATTTGC
196 AGAACACTTGTTATTTCGGGCCTTTCGGGGCCCATTAGTGCTGTTTTGAATCGTCTTCGATTTGC
* *
1168 CAAACCACAAAGCATTTCTATCAATTGTTTACGACCTAACTATAATCATTTTGGTGAGATTAGTC
261 CAAACCACAAAGCTTTTCTATCAATTGTTTACGACCTAACTATAATCATTTTGATGAGATTAGTC
* *
1233 CTCTGTGAAGTTTTTAGTTCATTCAGAACACTTGTTATTTCGGGCCTTTCGAGGCCGAATAGTGC
326 CTCTGTGAAGTTTTTAGCTCATTCAGAACACTTGTTATTTCGGGCCTTTCGAGGCCCAATAGTGC
* *
1298 TGTTTTGAATCGACTTCAATTTGCCAAACCACAAAGCTTTTCTTTCAATTGTTTACGACCTTAAC
391 TGTTTTGAATCGACTTCAATTTACCAAACCACAAAGCTTTTCTTTCAATTGTTTACAACC-TAAC
1363 CATAATTA
455 CATAATTA
* * * *
1371 TTTTGATAAGATTAGACCATTTTGAAGTTTTTAGCACATTCAGTAACACTTGTTATTTCGGGCCC
1 TTTTGATGAGATTAGTCCATTGTGAAGTTTTTAGCACATTCAG-AACACTTGTTATTTCGGGCCT
* ** * *
1436 TTT-GGGCCCATTACTGCTG-TTTGAATCGTCTTCGATTTAGCAAACTACAAAGCTTTTGTTTCA
65 TTTGGGGCCCATTATTGCTGTTTTGAATCGTCTTAAATTTAGCAAACCACAAAGCTTTTCTTTCA
* * *
1499 ATTGTTTACGATCTAACTATAGTTATTTTGATGAGATTAGTCCATTGTTGAAGTTTTTTAGCTCA
130 ATTGTTTACGACCTAACTATAGTTATTTTGATGAGATTAGTCCACTG-TGAAG-TTTTTAGGTCA
1564 TTCAGAACACTTGTTATTTCGGGCCTTTCGGGGCCCATTAGTGTCTGTTTTGAATCGTCTTCGAT
193 TTCAGAACACTTGTTATTTCGGGCCTTTCGGGGCCCATTAGTG-CTGTTTTGAATCGTCTTCGAT
* * * * * *
1629 TTAAGCAAAACCACAAAGCTTTTCTTTCAATTGTTTACAACCTAATTATATTTATTTTGATGAGA
257 TT--GCCAAACCACAAAGCTTTTCTATCAATTGTTTACGACCTAACTATAATCATTTTGATGAGA
* * *
1694 TTAGTCCAT-TG-AAAGTTTTTAGCTCATTCAGAACACCTGTTATTTCGGGCCTTTCGGGGCCCA
320 TTAGTCC-TCTGTGAAGTTTTTAGCTCATTCAGAACACTTGTTATTTCGGGCCTTTCGAGGCCCA
* * * * *
1757 TTACTGCTGTTTTGAATCGTCTTCGATTTAGCAAACCACAAAGC-TTTCTTTCAATTGTTTACGA
384 ATAGTGCTGTTTTGAATCGACTTCAATTTACCAAACCACAAAGCTTTTCTTTCAATTGTTTAC-A
*
1821 ACCTAACTATAA-TA
448 ACCTAACCATAATTA
* *
1835 TTTTAATGAGATTAGTCCATTCTGAAGTTTTTAG
1 TTTTGATGAGATTAGTCCATTGTGAAGTTTTTAG
Statistics
Matches: 1221, Mismatches: 143, Indels: 75
0.85 0.10 0.05
Matches are distributed among these distances:
438 275 0.23
439 86 0.07
440 22 0.02
442 1 0.00
459 1 0.00
462 75 0.06
463 378 0.31
464 124 0.10
465 56 0.05
466 107 0.09
467 95 0.08
468 1 0.00
ACGTcount: A:0.24, C:0.19, G:0.17, T:0.40
Consensus pattern (462 bp):
TTTTGATGAGATTAGTCCATTGTGAAGTTTTTAGCACATTCAGAACACTTGTTATTTCGGGCCTT
TTGGGGCCCATTATTGCTGTTTTGAATCGTCTTAAATTTAGCAAACCACAAAGCTTTTCTTTCAA
TTGTTTACGACCTAACTATAGTTATTTTGATGAGATTAGTCCACTGTGAAGTTTTTAGGTCATTC
AGAACACTTGTTATTTCGGGCCTTTCGGGGCCCATTAGTGCTGTTTTGAATCGTCTTCGATTTGC
CAAACCACAAAGCTTTTCTATCAATTGTTTACGACCTAACTATAATCATTTTGATGAGATTAGTC
CTCTGTGAAGTTTTTAGCTCATTCAGAACACTTGTTATTTCGGGCCTTTCGAGGCCCAATAGTGC
TGTTTTGAATCGACTTCAATTTACCAAACCACAAAGCTTTTCTTTCAATTGTTTACAACCTAACC
ATAATTA
Found at i:1177 original size:130 final size:130
Alignment explanation
Indices: 944--1205 Score: 416
Period size: 130 Copynumber: 2.0 Consensus size: 130
934 TTGATGAGAT
* * *
944 TAGTCCATTGTGAAGTTTTTTGCTCATTTAGAACACTTGTTATTTCGGGCCTTTCGGGGCCCATT
1 TAGTCCACTGTGAAGTTTTTAGCTCATTCAGAACACTTGTTATTTCGGGCCTTTCGGGGCCCATT
* * * * *
1009 AGTGCTGTTTTGAATCGTCTTAAATTTGGCAAACCACAAAGCTTTTCTTTTAATTGTTTACGGCC
66 AGTGCTGTTTTGAATCGTCTTAAATTTGCCAAACCACAAAGCATTTCTATCAATTGTTTACGACC
* *
1074 TAGTCCACTGTGAAGTTTTTAGGTCATTCAGAACACTTGTTATTTCGGGCCTTTCGGGGCCTATT
1 TAGTCCACTGTGAAGTTTTTAGCTCATTCAGAACACTTGTTATTTCGGGCCTTTCGGGGCCCATT
**
1139 AGTGCTGTTTTGAATCGTCTTCTATTTGCCAAACCACAAAGCATTTCTATCAATTGTTTACGACC
66 AGTGCTGTTTTGAATCGTCTTAAATTTGCCAAACCACAAAGCATTTCTATCAATTGTTTACGACC
1204 TA
1 TA
1206 ACTATAATCA
Statistics
Matches: 120, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
130 120 1.00
ACGTcount: A:0.22, C:0.20, G:0.19, T:0.39
Consensus pattern (130 bp):
TAGTCCACTGTGAAGTTTTTAGCTCATTCAGAACACTTGTTATTTCGGGCCTTTCGGGGCCCATT
AGTGCTGTTTTGAATCGTCTTAAATTTGCCAAACCACAAAGCATTTCTATCAATTGTTTACGACC
Found at i:1354 original size:154 final size:155
Alignment explanation
Indices: 1074--1868 Score: 1135
Period size: 154 Copynumber: 5.1 Consensus size: 155
1064 GTTTACGGCC
* * *
1074 TAGTCCACTGTGAAGTTTTTAGGTCATTCAGAACACTTGTTATTTCGGGCCTTTCGGGGCCTATT
1 TAGTCCATTGTGAAGTTTTTAGCTCATTCAGAACACTTGTTATTTCGGGCCTTTCGGGGCCCATT
* * *
1139 AGTGCTGTTTTGAATCGTCTTCTATTT-GCCAAACCACAAAGCATTTCTATCAATTGTTTACGAC
66 AGTGCTGTTTTGAATCGTCTTCGATTTAGCCAAACCACAAAGCTTTTCTTTCAATTGTTTACGAC
* *
1203 CTAACTATAATCATTTTGGTGAGAT
131 CTAACTATAATTATTTTGATGAGAT
* * * *
1228 TAGTCC-TCTGTGAAGTTTTTAGTTCATTCAGAACACTTGTTATTTCGGGCCTTTCGAGGCCGAA
1 TAGTCCAT-TGTGAAGTTTTTAGCTCATTCAGAACACTTGTTATTTCGGGCCTTTCGGGGCCCAT
* *
1292 TAGTGCTGTTTTGAATCGACTTCAATTT-GCCAAACCACAAAGCTTTTCTTTCAATTGTTTACGA
65 TAGTGCTGTTTTGAATCGTCTTCGATTTAGCCAAACCACAAAGCTTTTCTTTCAATTGTTTACGA
* *
1356 CCTTAACCATAATTATTTTGATAAGAT
130 CC-TAACTATAATTATTTTGATGAGAT
* * *
1383 TAGACCATTTTGAAGTTTTTAGCACATTCAGTAACACTTGTTATTTCGGGCCCTTT--GGGCCCA
1 TAGTCCATTGTGAAGTTTTTAGCTCATTCAG-AACACTTGTTATTTCGGG-CCTTTCGGGGCCCA
* * *
1446 TTACTGCTG-TTTGAATCGTCTTCGATTTAG-CAAACTACAAAGCTTTTGTTTCAATTGTTTACG
64 TTAGTGCTGTTTTGAATCGTCTTCGATTTAGCCAAACCACAAAGCTTTTCTTTCAATTGTTTACG
* *
1509 ATCTAACTATAGTTATTTTGATGAGAT
129 ACCTAACTATAATTATTTTGATGAGAT
1536 TAGTCCATTGTTGAAGTTTTTTAGCTCATTCAGAACACTTGTTATTTCGGGCCTTTCGGGGCCCA
1 TAGTCCATTG-TGAAG-TTTTTAGCTCATTCAGAACACTTGTTATTTCGGGCCTTTCGGGGCCCA
*
1601 TTAGTGTCTGTTTTGAATCGTCTTCGATTTAAGCAAAACCACAAAGCTTTTCTTTCAATTGTTTA
64 TTAGTG-CTGTTTTGAATCGTCTTCGATTT-AGCCAAACCACAAAGCTTTTCTTTCAATTGTTTA
* * *
1666 CAACCTAATTATATTTATTTTGATGAGAT
127 CGACCTAACTATAATTATTTTGATGAGAT
* *
1695 TAGTCCATTG-AAAGTTTTTAGCTCATTCAGAACACCTGTTATTTCGGGCCTTTCGGGGCCCATT
1 TAGTCCATTGTGAAGTTTTTAGCTCATTCAGAACACTTGTTATTTCGGGCCTTTCGGGGCCCATT
*
1759 ACTGCTGTTTTGAATCGTCTTCGATTTAG-CAAACCACAAAGC-TTTCTTTCAATTGTTTACGAA
66 AGTGCTGTTTTGAATCGTCTTCGATTTAGCCAAACCACAAAGCTTTTCTTTCAATTGTTTACG-A
*
1822 CCTAACTATAA-TATTTTAATGAGAT
130 CCTAACTATAATTATTTTGATGAGAT
*
1847 TAGTCCATTCTGAAGTTTTTAG
1 TAGTCCATTGTGAAGTTTTTAG
Statistics
Matches: 575, Mismatches: 50, Indels: 33
0.87 0.08 0.05
Matches are distributed among these distances:
152 40 0.07
153 66 0.11
154 195 0.34
155 108 0.19
156 74 0.13
157 27 0.05
158 2 0.00
159 63 0.11
ACGTcount: A:0.25, C:0.19, G:0.17, T:0.39
Consensus pattern (155 bp):
TAGTCCATTGTGAAGTTTTTAGCTCATTCAGAACACTTGTTATTTCGGGCCTTTCGGGGCCCATT
AGTGCTGTTTTGAATCGTCTTCGATTTAGCCAAACCACAAAGCTTTTCTTTCAATTGTTTACGAC
CTAACTATAATTATTTTGATGAGAT
Found at i:1737 original size:310 final size:306
Alignment explanation
Indices: 1084--1866 Score: 1112
Period size: 311 Copynumber: 2.5 Consensus size: 306
1074 TAGTCCACTG
* * *
1084 TGAAGTTTTTAGGTCATTCAGAACACTTGTTATTTCGGGCCTTTCGGGGCCTATTAGTGCTGTTT
1 TGAAGTTTTTAGCTCATTCAGAACACTTGTTATTTCGGGCCTTTC-GGGCCCATTACTGCTGTTT
* *
1149 TGAATCGTCTTCTATTT-GCCAAACCACAAAGCATTTCTATCAATTGTTTACGACCTAACTATAA
65 TGAATCGTCTTCGATTTAG-CAAACCACAAAGC-TTTCTTTCAATTGTTTACGACCTAACTAT-A
* * *
1213 TCATTTTGGTGAGATTAGTCC-TCTGTGAAG-TTTTTAGTTCATTCAGAACACTTGTTATTTCGG
127 TTATTTTGATGAGATTAGTCCAT-TGTGAAGTTTTTTAGCTCATTCAGAACACTTGTTATTTCGG
* *
1276 GCCTTTCGAGGCCGAATAGTGCTGTTTTGAATCGACTTCAATTTGCCAAACCACAAAGCTTTTCT
191 GCCTTTCGAGGCCCAATAGTGCTGTTTTGAATCGACTTCAATTTGCAAAACCACAAAGCTTTTCT
*
1341 TTCAATTGTTTACGACCTTAACCATAATTATTTTGATAAGATTAGACCATTT
256 TTCAATTGTTTACAACCTTAACCATAATTATTTTGATAAGATTAGACCA-TT
*
1393 TGAAGTTTTTAGCACATTCAGTAACACTTGTTATTTCGGGCCCTTT-GGGCCCATTACTGCTG-T
1 TGAAGTTTTTAGCTCATTCAG-AACACTTGTTATTTCGGG-CCTTTCGGGCCCATTACTGCTGTT
* * *
1456 TTGAATCGTCTTCGATTTAGCAAACTACAAAGCTTTTGTTTCAATTGTTTACGATCTAACTATAG
64 TTGAATCGTCTTCGATTTAGCAAACCACAAAGC-TTTCTTTCAATTGTTTACGACCTAACTATA-
1521 TTATTTTGATGAGATTAGTCCATTGTTGAAGTTTTTTAGCTCATTCAGAACACTTGTTATTTCGG
127 TTATTTTGATGAGATTAGTCCATTG-TGAAGTTTTTTAGCTCATTCAGAACACTTGTTATTTCGG
* * * *
1586 GCCTTTCGGGGCCCATTAGTGTCTGTTTTGAATCGTCTTCGATTTAAGCAAAACCACAAAGCTTT
191 GCCTTTCGAGGCCCAATAGTG-CTGTTTTGAATCGACTTCAATTT--GCAAAACCACAAAGCTTT
** * * *
1651 TCTTTCAATTGTTTACAACC-TAATTATATTTATTTTGATGAGATTAGTCCA-T
253 TCTTTCAATTGTTTACAACCTTAACCATAATTATTTTGATAAGATTAGACCATT
*
1703 TGAAAGTTTTTAGCTCATTCAGAACACCTGTTATTTCGGGCCTTTCGGGGCCCATTACTGCTGTT
1 TG-AAGTTTTTAGCTCATTCAGAACACTTGTTATTTCGGGCCTTTC-GGGCCCATTACTGCTGTT
*
1768 TTGAATCGTCTTCGATTTAGCAAACCACAAAGCTTTCTTTCAATTGTTTACGAACCTAACTATAA
64 TTGAATCGTCTTCGATTTAGCAAACCACAAAGCTTTCTTTCAATTGTTTACG-ACCTAACTATAT
* *
1833 TATTTTAATGAGATTAGTCCATTCTGAAGTTTTT
128 TATTTTGATGAGATTAGTCCATTGTGAAGTTTTT
1867 AG
Statistics
Matches: 426, Mismatches: 33, Indels: 29
0.87 0.07 0.06
Matches are distributed among these distances:
307 1 0.00
308 77 0.18
309 45 0.11
310 98 0.23
311 100 0.23
312 69 0.16
313 36 0.08
ACGTcount: A:0.25, C:0.19, G:0.17, T:0.40
Consensus pattern (306 bp):
TGAAGTTTTTAGCTCATTCAGAACACTTGTTATTTCGGGCCTTTCGGGCCCATTACTGCTGTTTT
GAATCGTCTTCGATTTAGCAAACCACAAAGCTTTCTTTCAATTGTTTACGACCTAACTATATTAT
TTTGATGAGATTAGTCCATTGTGAAGTTTTTTAGCTCATTCAGAACACTTGTTATTTCGGGCCTT
TCGAGGCCCAATAGTGCTGTTTTGAATCGACTTCAATTTGCAAAACCACAAAGCTTTTCTTTCAA
TTGTTTACAACCTTAACCATAATTATTTTGATAAGATTAGACCATT
Done.