Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01006608.1 Corchorus capsularis cultivar CVL-1 contig06629, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8229
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.31


Found at i:731 original size:17 final size:17

Alignment explanation


    Indices: 709--768  Score: 66
    Period size: 17  Copynumber: 3.2  Consensus size: 17

        699 TATAAATTTT

                             
        709 TAAAATAAATTTATATA
          1 TAAAATAAATTTATATA

                                  
        726 TAAAATAAAATTTATATATATA
          1 TAAAAT-AAA--T-T-TATATA

                   *         
        748 TAAAATATATTTATATA
          1 TAAAATAAATTTATATA

                
        765 TAAA
          1 TAAA

        769 CGAAAAGAGG


Statistics
Matches: 37,  Mismatches: 1, Indels: 10
        0.77            0.02        0.21

Matches are distributed among these distances:
  17   16  0.43
  18    4  0.11
  19    1  0.03
  20    1  0.03
  21    3  0.08
  22   12  0.32

ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42


Consensus pattern (17 bp):   
TAAAATAAATTTATATA
Done.