Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01006633.1 Corchorus capsularis cultivar CVL-1 contig06654, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 678

Length: 1131
ACGTcount: A:0.25, C:0.19, G:0.17, T:0.39


Found at i:283 original size:155 final size:154

Alignment explanation


    Indices: 1--1131  Score: 1662
    Period size: 155  Copynumber: 7.3  Consensus size: 154

                  *          *    *                       *        * *       
          1 TGTTTTCAATCGTCTTCGATTTCGCAAACCACAAAGCTTTTCTTTCCATAGTTTATGGCCTAACT
          1 TGTTTTGAATCGTCTTCAATTTGGCAAACCACAAAGCTTTTCTTTCAATAGTTTACGACCTAACT

                                  *                                  *       
         66 ATAATTATTTTGTTGAGATTAGGCCATTGTGAAGTTTTTAGCTCATTCAGAACACTTATTATTTC
         66 ATAATTATTTTGTTGAGATTAGTCCATTGTGAAGTTTTTAGCTCATTCAGAACACTTGTTATTTC

             *                 **   
        131 GAGCCTTTCGAGGCCCATTTGTGC
        131 GGGCCTTTCGAGGCCCATTACTGC

                 *           *               *           *    *  *          *
        155 TGTTTAGAATCGTCTTCGATTTGGCAAACCACAGAGTCTTTTCTTACAATTGTCTACGACCTAAA
          1 TGTTTTGAATCGTCTTCAATTTGGCAAACCACAAAG-CTTTTCTTTCAATAGTTTACGACCTAAC

                  *      *             *     * *                             
        220 TATAATCATTTTGGTGAGATTAGTCCACTGTGATGATTTTAGCTCAATTC-GAACACTTGTTATT
         65 TATAATTATTTTGTTGAGATTAGTCCATTGTGAAGTTTTTAGCTC-ATTCAGAACACTTGTTATT

             *          *             
        284 TAGGGCCTTTCGGGGCCCATTACTGC
        129 TCGGGCCTTTCGAGGCCCATTACTGC

                   *    *                            *                       
        310 TGTTTTGTATCGGCTTCAATTTGGCAAACCACAAAGCATTTCCTTTCAATAGTTTACGACCTAAC
          1 TGTTTTGAATCGTCTTCAATTTGGCAAACCACAAAGC-TTTTCTTTCAATAGTTTACGACCTAAC

                                                *             *          *   
        375 TATAATTATTTTGTTGAGATTAGTCCATTGTGAAGTATTTAGCTCATTCAAAACACTTGTTCTTT
         65 TATAATTATTTTGTTGAGATTAGTCCATTGTGAAGTTTTTAGCTCATTCAGAACACTTGTTATTT

                                    *
        440 CGGGCCTTTCGAGGCCCATTACTGT
        130 CGGGCCTTTCGAGGCCCATTACTGC

                                             *                  *     *      
        465 TGTTTTGAATCAG-CTTCAATTTAGGCAAACC-GAAAGCTTTTCTTTTCAATTGTTTAGGACCTA
          1 TGTTTTGAATC-GTCTTCAATTT-GGCAAACCACAAAGCTTTTC-TTTCAATAGTTTACGACCTA

                           *         *     *                                 
        528 ACTATAATTATTTTGATGAGATTAGGCCATTTTGAAGTTTTTAGCTCATTCAGAACACTTGTTAT
         63 ACTATAATTATTTTGTTGAGATTAGTCCATTGTGAAGTTTTTAGCTCATTCAGAACACTTGTTAT

                                  **   
        593 TTCGGGCCTTTCGAGGCCCATTTGTGC
        128 TTCGGGCCTTTCGAGGCCCATTACTGC

                             *                                               
        620 TGTTTTGAATCGTCTTCGATTTGGCAAACCACAAAGTCTTTTCTTTCAATAGTTTACGACCTAAC
          1 TGTTTTGAATCGTCTTCAATTTGGCAAACCACAAAG-CTTTTCTTTCAATAGTTTACGACCTAAC

                                                              *    *         
        685 TATAATTATTTTGTTGAGATTAGTCCATTGTGAAGTTTTTAGCTCATTCAAAACATTTGTTATTT
         65 TATAATTATTTTGTTGAGATTAGTCCATTGTGAAGTTTTTAGCTCATTCAGAACACTTGTTATTT

                                     
        750 CGGGCCTTTCGAGGCCCATTACTGC
        130 CGGGCCTTTCGAGGCCCATTACTGC

                                   *                          *     *        
        775 TGTTTTGAATCAG-CTTCAATTTAGCAAACCACAAAGCTTTTCTTTCAATTGTTTAGGACCTAAC
          1 TGTTTTGAATC-GTCTTCAATTTGGCAAACCACAAAGCTTTTCTTTCAATAGTTTACGACCTAAC

                         *         *     *                                   
        839 TATAATTATTTTGATGAGATTAGGCCATTTTGAAGTTTTTAGCTCATTTCAGAACACTTGTTATT
         65 TATAATTATTTTGTTGAGATTAGTCCATTGTGAAGTTTTTAGCTCA-TTCAGAACACTTGTTATT

                                 **   
        904 TCGGGCCTTTCGAGGCCCATTTGTGC
        129 TCGGGCCTTTCGAGGCCCATTACTGC

                                                                             
        930 TGTTTTGAATCGTCTTCAATTTGGCAAACCACAAAGCTTTTCTTTCAATAGTTTACGACCTAACT
          1 TGTTTTGAATCGTCTTCAATTTGGCAAACCACAAAGCTTTTCTTTCAATAGTTTACGACCTAACT

                                                             *               
        995 ATAATTATTTTGTTGAGATTAGTCCATTGTGAAGTTTTTAGCTCATTCAAAACACTTGTTATTTC
         66 ATAATTATTTTGTTGAGATTAGTCCATTGTGAAGTTTTTAGCTCATTCAGAACACTTGTTATTTC

                                    
       1060 GGGCCTTTCGAGGCCCATTACTGC
        131 GGGCCTTTCGAGGCCCATTACTGC

                                                              
       1084 TGTTTTGAATCAG-CTTCAATTTGGCAAACCACAAAGC-TTTCTTTCAAT
          1 TGTTTTGAATC-GTCTTCAATTTGGCAAACCACAAAGCTTTTCTTTCAAT


Statistics
Matches: 874,  Mismatches: 89, Indels: 29
        0.88            0.09        0.03

Matches are distributed among these distances:
 153   11  0.01
 154  196  0.22
 155  647  0.74
 156   20  0.02

ACGTcount: A:0.25, C:0.19, G:0.17, T:0.39


Consensus pattern (154 bp):   
TGTTTTGAATCGTCTTCAATTTGGCAAACCACAAAGCTTTTCTTTCAATAGTTTACGACCTAACT
ATAATTATTTTGTTGAGATTAGTCCATTGTGAAGTTTTTAGCTCATTCAGAACACTTGTTATTTC
GGGCCTTTCGAGGCCCATTACTGC

Done.