Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006667.1 Corchorus capsularis cultivar CVL-1 contig06688, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  43940

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3743--3769
4
6.8
4
100
0
54
0
25
22
51
1.48
3767--3805
2
19.5
2
100
0
78
0
48
0
51
1.00
9147--9183
3
12.3
3
100
0
74
64
0
0
35
0.94
16815--16883
34
2.0
35
94
2
122
33
5
14
46
1.68
18563--18595
12
2.8
12
95
0
57
24
24
18
33
1.97
27236--27269
17
2.0
17
88
0
50
0
8
5
85
0.75
30481--30589
38
2.9
37
82
10
148
43
12
17
26
1.85
32012--32044
2
16.5
2
100
0
66
51
0
0
48
1.00
41337--41484
73
2.0
73
98
0
287
46
9
16
27
1.78
42911--42948
19
2.0
20
85
15
53
28
5
2
63
1.30
43117--43246
22
5.8
22
73
10
86
33
10
16
38
1.84
43277--43307
12
2.6
12
94
0
53
45
9
16
29
1.79
43338--43365
1
28.0
1
100
0
56
100
0
0
0
0.00

Tables:   1

The End!