Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006668.1 Corchorus capsularis cultivar CVL-1 contig06689, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  8311

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
132--163
16
2.0
16
93
0
55
15
37
40
6
1.73
150--212
33
1.9
33
87
6
92
11
30
42
15
1.82
1654--1701
22
2.2
22
88
0
69
31
4
20
43
1.71
1780--1998
22
9.9
22
72
7
81
41
10
13
35
1.78
1786--1968
66
2.8
65
75
9
156
41
9
13
34
1.78
2077--2132
19
2.8
20
81
8
78
44
10
16
28
1.80
2115--2411
22
13.7
22
68
10
139
42
9
13
35
1.76
2223--2340
60
2.0
61
87
1
175
44
7
12
34
1.71
2110--2411
44
7.0
45
73
12
157
42
8
13
35
1.76
2352--2420
22
3.1
22
85
4
86
33
11
13
42
1.80
2374--2434
22
2.8
23
83
14
76
36
13
8
42
1.74
2599--2652
22
2.5
22
87
0
72
40
12
11
35
1.79
3477--3506
8
3.6
8
91
8
51
13
0
0
86
0.57
4321--4367
22
2.1
22
92
0
76
42
2
6
48
1.40
6085--6174
23
4.1
23
80
12
100
20
17
6
55
1.64
6266--6345
35
2.3
35
86
0
106
20
21
8
50
1.75
6336--6384
21
2.3
22
82
10
66
16
20
2
61
1.44
6502--6567
31
2.1
31
88
8
98
25
16
6
51
1.67
6599--6805
47
4.4
47
92
1
319
23
19
9
47
1.78
6680--6757
26
3.2
25
63
29
60
25
16
8
48
1.75
7405--7709
50
6.1
51
72
10
216
36
17
5
40
1.73
7440--7709
50
5.4
49
73
7
222
36
17
5
40
1.72
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7449--7709
101
2.6
100
88
3
373
36
18
4
41
1.71
7695--7733
20
2.0
20
89
0
60
35
15
15
33
1.89

Tables:   1

The End!