genome.fa.s6669.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006669.1 Corchorus capsularis cultivar CVL-1 contig06690, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60791

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3274--3300	14	1.9	14	100	0	54	22	18	7	51	1.70
3336--3404	36	1.9	36	85	11	97	20	17	2	59	1.50
3447--3537	7	12.7	7	75	6	67	18	18	1	61	1.41
3439--3543	14	7.9	14	73	12	78	20	18	2	59	1.51
3432--3497	28	2.4	28	84	0	96	15	18	3	63	1.43
3475--3536	22	2.8	23	78	9	67	19	17	0	62	1.32
3502--3552	15	3.5	15	78	5	50	21	19	1	56	1.51
3467--3574	51	2.1	51	83	6	130	20	19	1	58	1.49
3493--3557	29	2.2	30	88	5	105	18	20	1	60	1.45
3524--3722	20	9.4	22	74	11	150	19	19	5	55	1.61
3460--3565	29	3.7	29	77	7	72	19	19	1	58	1.49
3525--3692	22	7.9	19	75	16	113	20	20	5	52	1.65
3525--3722	65	3.1	64	76	9	183	19	19	5	55	1.61
3720--3807	14	6.4	14	70	17	58	19	21	1	57	1.47
3756--3805	22	2.3	22	75	0	55	22	20	0	58	1.40
3782--3885	35	3.0	35	94	0	172	20	24	0	54	1.50
3914--3957	19	2.2	20	96	4	81	31	20	0	47	1.50
3939--4018	42	1.9	42	84	5	108	22	20	3	53	1.61
4044--4112	30	2.3	30	82	0	84	23	20	10	46	1.80
8930--8983	28	2.0	28	88	3	83	44	24	14	16	1.85
11278--11449	49	3.5	49	79	3	179	35	20	25	18	1.95
11279--11463	98	1.9	97	79	3	210	36	20	25	17	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11424--11736	39	8.2	39	76	9	306	39	19	27	12	1.88
11424--11716	79	3.8	79	82	8	324	38	19	28	12	1.89
11588--11720	69	1.9	69	93	0	230	36	21	30	11	1.89
11681--11790	54	2.1	54	94	1	195	42	19	27	10	1.84
11737--12171	40	10.6	40	76	11	344	41	18	25	14	1.89
12029--12240	47	4.8	46	77	14	189	42	17	25	13	1.86
11990--12159	86	2.0	86	84	2	225	44	17	25	12	1.85
11913--12246	166	2.0	170	83	8	423	42	18	25	13	1.87
11833--12240	40	9.9	39	77	11	302	41	18	25	14	1.88
11737--12240	127	4.0	126	78	8	361	41	17	26	14	1.88
12880--12983	49	2.1	51	80	7	115	34	11	4	49	1.60
13016--13093	37	2.1	37	86	6	106	38	14	7	39	1.74
13053--13259	51	4.1	51	88	1	256	36	15	9	37	1.81
15815--15846	11	2.9	11	90	0	55	43	18	0	37	1.51
18533--18600	21	3.2	22	77	4	68	29	11	16	42	1.83
22662--22709	23	2.1	23	92	0	78	47	37	4	10	1.57
23985--24015	2	15.5	2	100	0	62	48	0	0	51	1.00
24882--24927	24	1.9	24	90	0	74	54	15	6	23	1.64
24989--25013	3	8.3	3	100	0	50	32	0	0	68	0.90
27696--27777	28	2.9	28	85	0	119	51	21	2	24	1.60
28658--28705	2	23.0	2	84	16	62	45	4	2	47	1.33
44639--44724	30	2.9	30	80	0	118	26	22	30	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46636--46776	33	4.3	33	85	3	135	20	41	26	10	1.85
46726--46777	10	4.9	10	73	13	50	23	48	23	5	1.72
58334--58369	19	1.9	18	88	5	54	41	2	22	33	1.68
58954--58989	18	2.1	17	94	5	63	11	16	8	63	1.49

Tables:   1

The End!