Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006670.1 Corchorus capsularis cultivar CVL-1 contig06691, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  44446

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1201--1259
30
2.0
30
83
6
75
44
3
15
37
1.63
1822--1857
18
2.1
17
89
5
54
13
13
8
63
1.50
4069--4100
2
16.0
2
100
0
64
50
0
0
50
1.00
12608--12638
1
31.0
1
100
0
62
100
0
0
0
0.00
12842--12931
48
1.9
46
88
4
135
15
10
15
58
1.62
13123--13157
2
18.5
2
88
11
56
54
0
0
45
0.99
16341--16376
18
2.0
18
94
0
63
16
30
22
30
1.96
16507--16543
13
2.8
14
84
8
51
59
8
0
32
1.27
21383--21432
23
2.2
23
85
7
66
50
4
2
44
1.32
30650--30737
39
2.3
39
100
0
176
29
15
15
38
1.89
32822--32847
5
5.2
5
100
0
52
0
38
19
42
1.51
36598--36654
30
1.9
30
85
7
80
29
15
29
24
1.96
39098--39164
27
2.5
27
80
0
71
52
11
32
2
1.53
39162--39203
12
3.8
12
78
15
54
50
21
28
0
1.49
39126--39211
33
3.0
27
69
21
66
52
19
26
1
1.53
39146--39211
33
2.0
33
87
0
96
51
22
24
1
1.57
40463--40570
27
4.0
27
84
4
130
50
16
30
1
1.56
40512--40562
15
3.6
15
70
24
56
49
21
27
1
1.60
40690--40722
2
16.5
2
100
0
66
48
0
0
51
1.00
43322--43383
12
5.5
11
76
19
65
51
17
29
1
1.55
43321--43377
24
2.5
23
86
8
73
50
19
28
1
1.57
43449--43498
26
1.9
26
95
0
91
28
4
26
42
1.73

Tables:   1

The End!