Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006671.1 Corchorus capsularis cultivar CVL-1 contig06692, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40370

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2535--2626
44
2.1
44
100
0
184
45
8
17
28
1.78
7863--7897
9
3.9
9
85
14
54
31
2
45
20
1.65
7865--7901
18
2.1
18
100
0
74
32
5
45
16
1.70
7868--7910
18
2.4
18
92
0
68
37
6
41
13
1.72
9957--10007
16
3.0
17
82
5
50
47
0
1
50
1.12
11565--11610
15
3.1
15
90
0
74
47
39
6
6
1.55
13391--13451
3
20.3
3
96
0
113
65
1
32
0
1.02
19484--19631
36
4.1
36
80
0
161
44
18
28
8
1.78
25033--25139
31
3.5
31
86
0
142
17
21
26
34
1.96
26038--26080
11
3.9
11
90
0
68
46
6
4
41
1.51
26034--26080
22
2.1
22
96
0
85
46
6
4
42
1.48
31250--31353
52
2.0
52
100
0
208
30
9
15
44
1.78
31760--31918
31
5.4
30
77
13
127
16
22
27
33
1.96
31807--31909
53
1.9
53
90
0
161
16
20
27
35
1.94
32948--32973
2
13.0
2
100
0
52
50
0
0
50
1.00
38513--38541
12
2.4
12
100
0
58
31
27
31
10
1.90

Tables:   1

The End!