Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006672.1 Corchorus capsularis cultivar CVL-1 contig06693, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  39902

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2--39
2
19.5
2
94
5
69
50
0
0
50
1.00
1364--1691
165
2.0
164
84
4
428
39
15
14
30
1.87
1747--1834
45
2.0
45
93
0
149
25
20
19
35
1.96
1868--1909
21
2.0
21
90
0
66
23
30
7
38
1.82
1972--2018
24
2.0
24
95
0
85
17
42
31
8
1.79
5516--5634
41
2.9
41
93
6
197
37
12
12
36
1.81
7587--7705
59
2.0
59
96
0
220
43
12
18
25
1.85
7612--7723
32
3.7
32
66
19
85
38
15
20
25
1.92
27722--27763
22
1.9
22
100
0
84
14
7
23
54
1.64
34635--34678
21
2.2
20
83
4
52
31
6
4
56
1.46
34771--34797
2
13.5
2
100
0
54
51
0
0
48
1.00
37687--37761
24
3.1
23
77
11
62
65
2
10
21
1.36
37696--37802
12
9.2
12
71
5
67
62
2
6
28
1.34
37850--37914
17
4.2
17
81
16
72
58
3
7
30
1.42
37862--37914
27
2.0
27
85
7
72
60
3
7
28
1.41
39472--39902
35
12.4
35
85
3
539
34
17
19
28
1.95
39472--39902
104
4.1
104
89
3
598
34
17
19
28
1.95

Tables:   1

The End!