Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006673.1 Corchorus capsularis cultivar CVL-1 contig06694, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  38976

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
954--980
6
4.5
6
100
0
54
29
0
14
55
1.40
12931--13013
32
3.0
26
72
24
87
45
8
8
37
1.65
14235--14266
14
2.4
13
94
5
55
71
6
6
15
1.26
19530--19636
50
2.1
50
86
3
153
34
14
12
39
1.83
20122--20339
69
3.1
68
86
4
269
27
27
16
27
1.97
20512--20637
22
5.8
22
82
5
134
30
22
2
44
1.65
20512--20944
8
59.7
7
67
22
95
29
23
3
43
1.71
20582--20842
22
12.0
21
71
12
102
29
22
3
44
1.69
20532--20883
14
24.6
14
67
22
123
29
23
3
43
1.72
20605--20747
58
2.5
57
80
13
143
32
21
4
41
1.72
20532--20944
28
14.2
28
69
19
137
29
23
4
43
1.72
21027--21097
8
9.6
8
72
17
64
29
23
2
43
1.68
21021--21305
14
20.1
14
68
24
97
29
21
5
43
1.74
21021--21199
22
7.9
22
78
14
175
30
22
3
43
1.71
21021--21247
58
3.9
58
76
9
212
30
21
4
42
1.74
21021--21274
22
11.6
20
73
16
120
29
21
5
43
1.74
22096--22178
32
3.0
26
72
24
87
45
8
8
37
1.65
23373--23418
14
3.4
14
96
3
85
69
6
6
17
1.32
23373--23432
28
2.2
27
82
8
77
70
6
8
15
1.33
30850--30886
19
2.0
18
89
5
56
40
8
21
29
1.82
36943--36979
19
2.0
18
89
5
56
40
8
21
29
1.82

Tables:   1

The End!