Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006674.1 Corchorus capsularis cultivar CVL-1 contig06695, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  49857

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--225
48
4.7
48
92
0
342
30
18
30
20
1.96
3392--3498
33
3.2
32
88
5
135
10
28
37
23
1.88
4155--4189
13
2.7
13
100
0
70
42
25
14
17
1.86
7948--7999
11
4.7
11
76
9
52
42
3
17
36
1.67
16838--16875
20
1.9
20
94
0
67
39
21
26
13
1.89
20379--20495
58
2.0
58
88
1
173
11
12
27
48
1.75
20781--20825
12
3.4
14
79
17
51
17
11
0
71
1.14
23667--23725
29
2.0
29
86
0
82
62
8
6
22
1.47
30724--30758
11
3.3
10
85
14
52
51
17
2
28
1.59
33059--33088
11
2.9
10
90
9
51
30
0
20
50
1.49
33093--33158
34
1.9
34
90
0
105
36
7
4
51
1.51
34062--34189
62
2.1
62
96
0
238
42
26
1
28
1.64
44897--44932
2
18.5
2
94
5
65
47
0
0
52
1.00
45063--45150
23
3.7
23
83
4
104
35
6
4
53
1.48
45063--45141
23
3.4
23
85
3
113
35
6
3
54
1.44
45269--45295
2
13.5
2
100
0
54
51
0
0
48
1.00

Tables:   1

The End!