Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006679.1 Corchorus capsularis cultivar CVL-1 contig06700, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  30310

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2130--2198
36
1.9
36
93
0
120
42
7
31
18
1.78
7250--7282
12
2.5
14
85
14
52
0
6
9
84
0.76
9182--9229
2
24.5
2
78
4
53
50
4
0
45
1.21
9385--9424
3
13.3
3
100
0
80
32
0
0
67
0.91
11335--11415
33
2.5
33
83
2
101
14
38
37
9
1.80
11367--11483
33
3.6
32
76
4
101
14
29
37
18
1.91
13643--13685
12
3.5
12
84
6
59
34
16
23
25
1.95
14692--14727
10
3.6
10
92
0
63
30
5
22
41
1.76
14689--14727
20
2.0
20
100
0
78
30
5
20
43
1.73
15721--15782
24
2.7
22
76
9
61
35
9
16
38
1.81
15921--16007
22
4.0
22
80
8
106
37
8
13
40
1.75
15920--16002
43
1.9
43
90
0
130
36
8
15
39
1.78
15995--16023
15
1.9
15
100
0
58
58
6
0
34
1.25
16736--16791
15
3.7
15
90
2
85
7
16
41
35
1.75
20588--20617
15
2.0
15
100
0
60
26
40
0
33
1.57
28805--28829
12
2.1
12
100
0
50
40
20
16
24
1.91

Tables:   1

The End!