Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006680.1 Corchorus capsularis cultivar CVL-1 contig06701, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  10888

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2666--2831
22
7.9
23
75
12
85
51
6
21
20
1.68
2690--2782
20
4.5
20
79
14
82
54
5
19
20
1.63
2894--2928
8
4.5
8
85
7
54
60
0
22
17
1.37
2893--2994
8
13.7
7
68
12
53
57
1
20
19
1.50
2894--2994
15
6.7
15
71
12
66
57
1
20
19
1.51
2877--2997
22
5.5
22
75
15
101
57
2
20
19
1.53
2912--2995
44
1.9
43
90
2
132
58
2
19
20
1.50
3195--3228
16
2.1
16
94
0
59
58
8
17
14
1.61
3357--3420
27
2.2
28
78
10
76
62
0
21
15
1.32
4975--5007
9
3.7
9
95
0
57
87
0
0
12
0.53
6468--6572
33
3.2
33
77
5
113
24
9
21
43
1.82
6601--6706
33
3.2
33
94
0
185
28
10
17
43
1.82
8522--8566
13
3.5
13
90
3
74
22
13
8
55
1.65
8563--8594
6
5.5
6
96
3
57
28
0
15
56
1.40
8915--8973
30
2.0
30
90
6
93
32
18
28
20
1.96
9930--9971
21
2.0
21
95
0
75
19
30
33
16
1.94
9951--10046
33
2.9
33
84
3
113
19
41
29
9
1.83

Tables:   1

The End!