Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006682.1 Corchorus capsularis cultivar CVL-1 contig06703, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57489

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2090--2137
12
4.0
12
89
7
71
35
2
14
47
1.56
4380--4559
74
2.4
74
93
0
306
31
13
15
39
1.87
6237--6276
3
13.3
3
100
0
80
32
0
0
67
0.91
8961--9019
6
9.8
6
85
5
66
42
0
0
57
0.98
10350--10414
14
4.6
14
74
9
60
35
9
18
36
1.83
10468--10502
14
2.5
14
90
0
52
34
11
11
42
1.77
13089--13123
16
2.2
16
100
0
70
31
5
20
42
1.75
13227--13261
17
2.1
17
88
0
52
25
11
20
42
1.85
13225--13272
17
3.0
15
80
14
51
29
8
20
41
1.81
16455--16742
144
2.0
144
100
0
576
27
22
20
28
1.99
17832--18086
38
6.7
38
89
1
377
22
18
35
23
1.95
17832--18093
115
2.3
114
90
1
418
22
17
35
24
1.95
20280--20541
38
6.9
38
94
1
454
21
19
36
22
1.95
20280--20541
115
2.3
114
93
1
454
21
19
36
22
1.95
39903--39939
19
1.9
19
88
0
56
48
8
2
40
1.47
56132--56162
1
31.0
1
100
0
62
0
0
0
100
0.00

Tables:   1

The End!