Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01006684.1 Corchorus capsularis cultivar CVL-1 contig06705, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 148991
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.33
Found at i:6760 original size:12 final size:13
Alignment explanation
Indices: 6735--6768 Score: 52
Period size: 12 Copynumber: 2.7 Consensus size: 13
6725 ATAATTATTG
6735 TTTGCTTTATTAA
1 TTTGCTTTATTAA
6748 TTTGCTTTA-TAA
1 TTTGCTTTATTAA
*
6760 TCTGCTTTA
1 TTTGCTTTA
6769 GATTTAGATT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
12 11 0.55
13 9 0.45
ACGTcount: A:0.21, C:0.12, G:0.09, T:0.59
Consensus pattern (13 bp):
TTTGCTTTATTAA
Found at i:6776 original size:6 final size:6
Alignment explanation
Indices: 6765--6797 Score: 66
Period size: 6 Copynumber: 5.5 Consensus size: 6
6755 TATAATCTGC
6765 TTTAGA TTTAGA TTTAGA TTTAGA TTTAGA TTT
1 TTTAGA TTTAGA TTTAGA TTTAGA TTTAGA TTT
6798 GCTTTGCTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.30, C:0.00, G:0.15, T:0.55
Consensus pattern (6 bp):
TTTAGA
Found at i:8363 original size:37 final size:37
Alignment explanation
Indices: 8289--8363 Score: 89
Period size: 37 Copynumber: 2.0 Consensus size: 37
8279 GGTTACTGTG
* **
8289 TGATCTACGACTTTCATGAAGAAGCCGAAAGTTAATT
1 TGATCTACGACTTTCATGAAGAAGCCAAAAGGGAATT
* *
8326 TGATCTACGACTTTCATGAAG-GGTTCAAAAGGGAATT
1 TGATCTACGACTTTCATGAAGAAG-CCAAAAGGGAATT
8363 T
1 T
8364 TTATGTTTCA
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
36 1 0.03
37 31 0.97
ACGTcount: A:0.33, C:0.15, G:0.21, T:0.31
Consensus pattern (37 bp):
TGATCTACGACTTTCATGAAGAAGCCAAAAGGGAATT
Found at i:9236 original size:21 final size:21
Alignment explanation
Indices: 9210--9249 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
9200 TCTGGATTGC
*
9210 TAAATACCGCGCCCCTTTTGT
1 TAAATACCGCCCCCCTTTTGT
9231 TAAATACCGCCCCCCTTTT
1 TAAATACCGCCCCCCTTTT
9250 TACACTTTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.38, G:0.10, T:0.33
Consensus pattern (21 bp):
TAAATACCGCCCCCCTTTTGT
Found at i:9463 original size:18 final size:18
Alignment explanation
Indices: 9442--9525 Score: 67
Period size: 15 Copynumber: 5.1 Consensus size: 18
9432 TGGGCAGGCC
9442 GCCCAAATTGGGCGGCTT
1 GCCCAAATTGGGCGGCTT
* *
9460 GCCC--A-TGGGAGGC-C
1 GCCCAAATTGGGCGGCTT
9474 GCCCAAATTGGGCGGCTT
1 GCCCAAATTGGGCGGCTT
* * *
9492 ACCC--A-TGGGAGGC-C
1 GCCCAAATTGGGCGGCTT
9506 GCCCAAATTGGGCGGCTT
1 GCCCAAATTGGGCGGCTT
9524 GC
1 GC
9526 ACATGGTAGG
Statistics
Matches: 48, Mismatches: 10, Indels: 16
0.65 0.14 0.22
Matches are distributed among these distances:
14 7 0.15
15 14 0.29
16 4 0.08
17 14 0.29
18 9 0.19
ACGTcount: A:0.17, C:0.31, G:0.36, T:0.17
Consensus pattern (18 bp):
GCCCAAATTGGGCGGCTT
Found at i:9475 original size:32 final size:32
Alignment explanation
Indices: 9429--9553 Score: 214
Period size: 32 Copynumber: 3.9 Consensus size: 32
9419 CCGCCCAAGG
9429 CCATGGGCAGGCCGCCCAAATTGGGCGGCTTGC
1 CCATGGG-AGGCCGCCCAAATTGGGCGGCTTGC
*
9462 CCATGGGAGGCCGCCCAAATTGGGCGGCTTAC
1 CCATGGGAGGCCGCCCAAATTGGGCGGCTTGC
9494 CCATGGGAGGCCGCCCAAATTGGGCGGCTTGC
1 CCATGGGAGGCCGCCCAAATTGGGCGGCTTGC
* *
9526 ACATGGTAGGCCGCCCAAATTGGGCGGC
1 CCATGGGAGGCCGCCCAAATTGGGCGGC
9554 AGAGCCAATT
Statistics
Matches: 88, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
32 81 0.92
33 7 0.08
ACGTcount: A:0.18, C:0.31, G:0.36, T:0.15
Consensus pattern (32 bp):
CCATGGGAGGCCGCCCAAATTGGGCGGCTTGC
Found at i:9637 original size:22 final size:23
Alignment explanation
Indices: 9585--9638 Score: 74
Period size: 22 Copynumber: 2.4 Consensus size: 23
9575 AAAATAATTT
*
9585 TTAATTAATTAGTATTTAATTAC
1 TTAATTTATTAGTATTTAATTAC
* *
9608 TTAGTTTATTAGT-TTTAATTAG
1 TTAATTTATTAGTATTTAATTAC
9630 TTAATTTAT
1 TTAATTTAT
9639 GATTAATTAC
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
22 16 0.59
23 11 0.41
ACGTcount: A:0.33, C:0.02, G:0.07, T:0.57
Consensus pattern (23 bp):
TTAATTTATTAGTATTTAATTAC
Found at i:10048 original size:49 final size:49
Alignment explanation
Indices: 9971--10069 Score: 162
Period size: 49 Copynumber: 2.0 Consensus size: 49
9961 TTTGCTCCTA
*
9971 TTTTTATGGGCCTTTGCATATTTCACACCAAGAATTAATTCCATGCAAG
1 TTTTGATGGGCCTTTGCATATTTCACACCAAGAATTAATTCCATGCAAG
* * *
10020 TTTTGATGGGCCTTTGCGTATTTCACACCAAGAATTAGTTCCATGTAAG
1 TTTTGATGGGCCTTTGCATATTTCACACCAAGAATTAATTCCATGCAAG
10069 T
1 T
10070 CAGATTTTCT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
49 46 1.00
ACGTcount: A:0.26, C:0.19, G:0.17, T:0.37
Consensus pattern (49 bp):
TTTTGATGGGCCTTTGCATATTTCACACCAAGAATTAATTCCATGCAAG
Found at i:11260 original size:12 final size:12
Alignment explanation
Indices: 11243--11267 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
11233 TTATTTTAAA
11243 TTTAAAATATTT
1 TTTAAAATATTT
11255 TTTAAAATATTT
1 TTTAAAATATTT
11267 T
1 T
11268 ATATATTAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (12 bp):
TTTAAAATATTT
Found at i:11262 original size:19 final size:21
Alignment explanation
Indices: 11220--11260 Score: 61
Period size: 18 Copynumber: 2.1 Consensus size: 21
11210 AATTAAAAAT
11220 AATTTAAAAACTATTATTTTA
1 AATTTAAAAACTATTATTTTA
11241 AATTT-AAAA-TATT-TTTTA
1 AATTTAAAAACTATTATTTTA
11259 AA
1 AA
11261 ATATTTTATA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
18 7 0.35
19 4 0.20
20 4 0.20
21 5 0.25
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (21 bp):
AATTTAAAAACTATTATTTTA
Found at i:12516 original size:20 final size:21
Alignment explanation
Indices: 12484--12523 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
12474 CTAAGGTTTC
12484 TTTTCAAAGAAAAATAATTTT
1 TTTTCAAAGAAAAATAATTTT
*
12505 TTTTCAAA-AAAAATTATTT
1 TTTTCAAAGAAAAATAATTT
12524 AAAACATTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.47, C:0.05, G:0.03, T:0.45
Consensus pattern (21 bp):
TTTTCAAAGAAAAATAATTTT
Found at i:13934 original size:1 final size:1
Alignment explanation
Indices: 13928--13957 Score: 60
Period size: 1 Copynumber: 30.0 Consensus size: 1
13918 GACTGACTGC
13928 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
13958 CTGACTGACT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 29 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:15043 original size:49 final size:49
Alignment explanation
Indices: 14990--15083 Score: 188
Period size: 49 Copynumber: 1.9 Consensus size: 49
14980 TAATACATCT
14990 TACATTCCTACTATAATACAAGATTGAATTGCCTTTGAACTCTCATGTA
1 TACATTCCTACTATAATACAAGATTGAATTGCCTTTGAACTCTCATGTA
15039 TACATTCCTACTATAATACAAGATTGAATTGCCTTTGAACTCTCA
1 TACATTCCTACTATAATACAAGATTGAATTGCCTTTGAACTCTCA
15084 AGCACATGAT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 45 1.00
ACGTcount: A:0.33, C:0.21, G:0.10, T:0.36
Consensus pattern (49 bp):
TACATTCCTACTATAATACAAGATTGAATTGCCTTTGAACTCTCATGTA
Found at i:20877 original size:91 final size:92
Alignment explanation
Indices: 20722--20912 Score: 368
Period size: 91 Copynumber: 2.1 Consensus size: 92
20712 AAATTTGCAC
20722 ATGAATT-AGCCCGCTTAGATTGTGAGGTTGGATTTAATTGTGTTTGCAGCGGAACTTCTCTGCC
1 ATGAATTGAGCCCGCTTAGATTGTGAGGTTGGATTTAATTGTGTTTGCAGCGGAACTTCTCTGCC
20786 TCTTTGTAATCCGGATTGTTAAAATCA
66 TCTTTGTAATCCGGATTGTTAAAATCA
20813 ATGAATTGA-CCCGCTTAGATTGTGAGGTTGGATTTAATTGTGTTTGCAGCGGAACTTCTCTGCC
1 ATGAATTGAGCCCGCTTAGATTGTGAGGTTGGATTTAATTGTGTTTGCAGCGGAACTTCTCTGCC
20877 TCTTTGTAATCCGGATTGTTAAAATCA
66 TCTTTGTAATCCGGATTGTTAAAATCA
20904 ATGAATTGA
1 ATGAATTGA
20913 AAGAATGTTT
Statistics
Matches: 99, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
91 98 0.99
92 1 0.01
ACGTcount: A:0.24, C:0.16, G:0.23, T:0.37
Consensus pattern (92 bp):
ATGAATTGAGCCCGCTTAGATTGTGAGGTTGGATTTAATTGTGTTTGCAGCGGAACTTCTCTGCC
TCTTTGTAATCCGGATTGTTAAAATCA
Found at i:21646 original size:44 final size:45
Alignment explanation
Indices: 21596--21684 Score: 153
Period size: 45 Copynumber: 2.0 Consensus size: 45
21586 TAATAGAGTA
21596 GTGGAA-TACTAAAAGATCCCTACCCCGAATTAATGATAAGCTGG
1 GTGGAATTACTAAAAGATCCCTACCCCGAATTAATGATAAGCTGG
* *
21640 GTGGAATTACTAAAAGATCCCTACCCCGGATTAATGATGAGCTGG
1 GTGGAATTACTAAAAGATCCCTACCCCGAATTAATGATAAGCTGG
21685 AGAAGTAATC
Statistics
Matches: 42, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
44 6 0.14
45 36 0.86
ACGTcount: A:0.34, C:0.20, G:0.22, T:0.24
Consensus pattern (45 bp):
GTGGAATTACTAAAAGATCCCTACCCCGAATTAATGATAAGCTGG
Found at i:22362 original size:67 final size:67
Alignment explanation
Indices: 22284--22421 Score: 276
Period size: 67 Copynumber: 2.1 Consensus size: 67
22274 ACAATCCCAA
22284 TAAACACGTCTAAGCACTGTCTCCATTTTAAATTTACGATGAAAATCTTTTAATATATGCATGGT
1 TAAACACGTCTAAGCACTGTCTCCATTTTAAATTTACGATGAAAATCTTTTAATATATGCATGGT
22349 GT
66 GT
22351 TAAACACGTCTAAGCACTGTCTCCATTTTAAATTTACGATGAAAATCTTTTAATATATGCATGGT
1 TAAACACGTCTAAGCACTGTCTCCATTTTAAATTTACGATGAAAATCTTTTAATATATGCATGGT
22416 GT
66 GT
22418 TAAA
1 TAAA
22422 TAACGATCCT
Statistics
Matches: 71, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
67 71 1.00
ACGTcount: A:0.34, C:0.16, G:0.13, T:0.37
Consensus pattern (67 bp):
TAAACACGTCTAAGCACTGTCTCCATTTTAAATTTACGATGAAAATCTTTTAATATATGCATGGT
GT
Found at i:25807 original size:27 final size:27
Alignment explanation
Indices: 25697--25808 Score: 64
Period size: 27 Copynumber: 4.1 Consensus size: 27
25687 GTTTGTGGTT
*
25697 GTTGCGGCAGTGGAGCAGTAATCTGTG
1 GTTGCGGCAGTGGAGCAGTAATCTGCG
* * ** * ** * *
25724 GCTGTGAAAGTGAAGCTTTAATATGCA
1 GTTGCGGCAGTGGAGCAGTAATCTGCG
* * * * **
25751 ATTGTGGTAG-GGAAGCATTAATCTAAG
1 GTTGCGGCAGTGG-AGCAGTAATCTGCG
25778 GTTGCGGCAGTGGAGCAGTAATCTGCG
1 GTTGCGGCAGTGGAGCAGTAATCTGCG
25805 GTTG
1 GTTG
25809 TAGCAGTACA
Statistics
Matches: 57, Mismatches: 26, Indels: 4
0.66 0.30 0.05
Matches are distributed among these distances:
26 1 0.02
27 54 0.95
28 2 0.04
ACGTcount: A:0.25, C:0.12, G:0.35, T:0.28
Consensus pattern (27 bp):
GTTGCGGCAGTGGAGCAGTAATCTGCG
Found at i:29162 original size:14 final size:15
Alignment explanation
Indices: 29140--29176 Score: 58
Period size: 14 Copynumber: 2.5 Consensus size: 15
29130 TCTTTTTTTC
*
29140 TTCTTTAAAGGATTT
1 TTCTTTAAAAGATTT
29155 TT-TTTAAAAGATTT
1 TTCTTTAAAAGATTT
29169 TTCTTTAA
1 TTCTTTAA
29177 TTTCCTTGTG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 13 0.65
15 7 0.35
ACGTcount: A:0.30, C:0.05, G:0.08, T:0.57
Consensus pattern (15 bp):
TTCTTTAAAAGATTT
Found at i:29896 original size:11 final size:11
Alignment explanation
Indices: 29876--29910 Score: 61
Period size: 11 Copynumber: 3.2 Consensus size: 11
29866 TTGACAGCGC
29876 AACAAAAACAA
1 AACAAAAACAA
*
29887 AACGAAAACAA
1 AACAAAAACAA
29898 AACAAAAACAA
1 AACAAAAACAA
29909 AA
1 AA
29911 AACAGAAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.80, C:0.17, G:0.03, T:0.00
Consensus pattern (11 bp):
AACAAAAACAA
Found at i:31704 original size:24 final size:24
Alignment explanation
Indices: 31664--31713 Score: 57
Period size: 24 Copynumber: 2.1 Consensus size: 24
31654 AAAATTTATT
* * *
31664 AAAAAAAAGTCATGTTACAAGTAA
1 AAAAAAAAGTCAAGTTAAAAATAA
31688 AAAAAAGAAG-CAAGTTAAAAATAA
1 AAAAAA-AAGTCAAGTTAAAAATAA
31712 AA
1 AA
31714 TTTATTAATA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
24 19 0.86
25 3 0.14
ACGTcount: A:0.66, C:0.06, G:0.12, T:0.16
Consensus pattern (24 bp):
AAAAAAAAGTCAAGTTAAAAATAA
Found at i:32116 original size:31 final size:31
Alignment explanation
Indices: 32078--32150 Score: 128
Period size: 31 Copynumber: 2.4 Consensus size: 31
32068 AGCCGAGCTT
32078 GAACTCGAGCTGCTCGAATAATAAACGAGTC
1 GAACTCGAGCTGCTCGAATAATAAACGAGTC
*
32109 GAACTCGAGCTGCTCGAGTAATAAACGAGTC
1 GAACTCGAGCTGCTCGAATAATAAACGAGTC
*
32140 GAGCTCGAGCT
1 GAACTCGAGCT
32151 TTCAAATACT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 40 1.00
ACGTcount: A:0.32, C:0.23, G:0.26, T:0.19
Consensus pattern (31 bp):
GAACTCGAGCTGCTCGAATAATAAACGAGTC
Found at i:36974 original size:18 final size:18
Alignment explanation
Indices: 36951--36986 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
36941 TGGGTTGGAC
36951 GATTTAACGTTTTAGCTT
1 GATTTAACGTTTTAGCTT
36969 GATTTAACGTTTTAGCTT
1 GATTTAACGTTTTAGCTT
36987 TAATTCTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.22, C:0.11, G:0.17, T:0.50
Consensus pattern (18 bp):
GATTTAACGTTTTAGCTT
Found at i:46335 original size:2 final size:2
Alignment explanation
Indices: 46328--46359 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
46318 AATTTAATGG
46328 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
46360 CTTGGAAGAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:49410 original size:87 final size:86
Alignment explanation
Indices: 49264--49435 Score: 240
Period size: 87 Copynumber: 2.0 Consensus size: 86
49254 TAGGCACAAA
* * *
49264 ATCCTCTACCAAATAAGTTTCCAAAGATTTTACATCATTACTAACCATAACTCCATTAGGAAGAT
1 ATCCTCTACCAAATAAGTTTCCAAAGATTTTACACCATAACCAACCATAACTCCATTAGGAAGAT
49329 CATTAA-AATTTGAATTCAAACT
66 CA-TAACAA-TTGAATTCAAACT
* * *
49351 ATCCTCTACCATAAT-ATTTTCCAAAGATTTTGCACCATAACCACCCATAACTCCATTAGGAAGA
1 ATCCTCTACCA-AATAAGTTTCCAAAGATTTTACACCATAACCAACCATAACTCCATTAGGAAGA
49415 TCATAATCAATTGAATTCAAA
65 TCATAA-CAATTGAATTCAAA
49436 TTATTCTCCA
Statistics
Matches: 76, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
86 3 0.04
87 68 0.89
88 5 0.07
ACGTcount: A:0.40, C:0.23, G:0.07, T:0.31
Consensus pattern (86 bp):
ATCCTCTACCAAATAAGTTTCCAAAGATTTTACACCATAACCAACCATAACTCCATTAGGAAGAT
CATAACAATTGAATTCAAACT
Found at i:49459 original size:87 final size:87
Alignment explanation
Indices: 49264--49470 Score: 233
Period size: 87 Copynumber: 2.4 Consensus size: 87
49254 TAGGCACAAA
* * * *
49264 ATCCTCTACCA-AATAAGTTTCCAAAGATTTTACATCATTACTAACCATAACTCCATTAGGAAGA
1 ATCCTCCACCATAAT-AGTTTCCAAAGATTTTACACCATAACCAACCATAACTCCATTAGGAAGA
49328 TCATTAAAATTTGAATTCAAACT
65 TCATTAAAATTTGAATTCAAACT
* * * *
49351 ATCCTCTACCATAATATTTTCCAAAGATTTTGCACCATAACCACCCATAACTCCATTAGGAAGAT
1 ATCCTCCACCATAATAGTTTCCAAAGATTTTACACCATAACCAACCATAACTCCATTAGGAAGAT
*
49416 CA-TAATCAA-TTGAATTCAAATT
66 CATTAA--AATTTGAATTCAAACT
* * * *
49438 ATTCTCCACC-TTATCAGTTTCCACAGAATTTAC
1 ATCCTCCACCATAAT-AGTTTCCAAAGATTTTAC
49471 GCCTAAAAAT
Statistics
Matches: 102, Mismatches: 14, Indels: 8
0.82 0.11 0.06
Matches are distributed among these distances:
86 6 0.06
87 91 0.89
88 5 0.05
ACGTcount: A:0.37, C:0.24, G:0.07, T:0.32
Consensus pattern (87 bp):
ATCCTCCACCATAATAGTTTCCAAAGATTTTACACCATAACCAACCATAACTCCATTAGGAAGAT
CATTAAAATTTGAATTCAAACT
Found at i:55198 original size:20 final size:22
Alignment explanation
Indices: 55175--55216 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
55165 CCCGTTTAGT
55175 CTTCATTT-T-TTTGAATTCTG
1 CTTCATTTATATTTGAATTCTG
55195 CTTCATTTCATATTTGAATTCT
1 CTTCATTT-ATATTTGAATTCT
55217 TATTGTTGTT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 8 0.42
22 1 0.05
23 10 0.53
ACGTcount: A:0.19, C:0.17, G:0.07, T:0.57
Consensus pattern (22 bp):
CTTCATTTATATTTGAATTCTG
Found at i:58481 original size:30 final size:30
Alignment explanation
Indices: 58445--58505 Score: 113
Period size: 30 Copynumber: 2.0 Consensus size: 30
58435 GGTACACTCT
58445 CTTTGACCTTCGATTCTTCTCTTTGAATTG
1 CTTTGACCTTCGATTCTTCTCTTTGAATTG
*
58475 CTTTGACCTTTGATTCTTCTCTTTGAATTG
1 CTTTGACCTTCGATTCTTCTCTTTGAATTG
58505 C
1 C
58506 ATACTGTATA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.13, C:0.23, G:0.13, T:0.51
Consensus pattern (30 bp):
CTTTGACCTTCGATTCTTCTCTTTGAATTG
Found at i:60712 original size:12 final size:12
Alignment explanation
Indices: 60678--60720 Score: 50
Period size: 12 Copynumber: 3.6 Consensus size: 12
60668 ATGGAAGTCA
*
60678 TGGTGGTGGTGG
1 TGGTGGTAGTGG
* * *
60690 AGGAGGCAGTGG
1 TGGTGGTAGTGG
60702 TGGTGGTAGTGG
1 TGGTGGTAGTGG
60714 TGGTGGT
1 TGGTGGT
60721 GGAGGTAGTG
Statistics
Matches: 24, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.09, C:0.02, G:0.60, T:0.28
Consensus pattern (12 bp):
TGGTGGTAGTGG
Found at i:60736 original size:18 final size:18
Alignment explanation
Indices: 60682--60737 Score: 64
Period size: 18 Copynumber: 3.3 Consensus size: 18
60672 AAGTCATGGT
60682 GGTGGTGGAGG-AG-GCA
1 GGTGGTGGAGGTAGTGCA
* **
60698 -GTGGTGGTGGTAGTGGT
1 GGTGGTGGAGGTAGTGCA
60715 GGTGGTGGAGGTAGTGCA
1 GGTGGTGGAGGTAGTGCA
60733 GGTGG
1 GGTGG
60738 AGCCTCTGGG
Statistics
Matches: 31, Mismatches: 6, Indels: 4
0.76 0.15 0.10
Matches are distributed among these distances:
15 9 0.29
16 2 0.06
17 1 0.03
18 19 0.61
ACGTcount: A:0.12, C:0.04, G:0.61, T:0.23
Consensus pattern (18 bp):
GGTGGTGGAGGTAGTGCA
Found at i:60840 original size:18 final size:18
Alignment explanation
Indices: 60819--60863 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 18
60809 CTGGTGGTCA
*
60819 TGGAGGTGGTGGCGGAAG
1 TGGAGGTGGTGGAGGAAG
* *
60837 TGGAGGCGGTGGAGGTAG
1 TGGAGGTGGTGGAGGAAG
*
60855 TGCAGGTGG
1 TGGAGGTGG
60864 AGCATCTGGA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.16, C:0.07, G:0.60, T:0.18
Consensus pattern (18 bp):
TGGAGGTGGTGGAGGAAG
Found at i:61006 original size:12 final size:12
Alignment explanation
Indices: 60989--61042 Score: 54
Period size: 12 Copynumber: 4.5 Consensus size: 12
60979 GGGGGAGAGC
60989 ATGGTGGTGGTT
1 ATGGTGGTGGTT
*
61001 ATGGTGGTGGTC
1 ATGGTGGTGGTT
* *
61013 AAGGTGCTGGTT
1 ATGGTGGTGGTT
* **
61025 CTGGCAGTGGTT
1 ATGGTGGTGGTT
61037 ATGGTG
1 ATGGTG
61043 CTGGCGGTGC
Statistics
Matches: 30, Mismatches: 12, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
12 30 1.00
ACGTcount: A:0.11, C:0.07, G:0.46, T:0.35
Consensus pattern (12 bp):
ATGGTGGTGGTT
Found at i:65106 original size:36 final size:36
Alignment explanation
Indices: 65059--65130 Score: 144
Period size: 36 Copynumber: 2.0 Consensus size: 36
65049 GTGGTTGGAG
65059 GGTTTTTTGTAGTCAATCGATTGGCTCCAAGGTGAA
1 GGTTTTTTGTAGTCAATCGATTGGCTCCAAGGTGAA
65095 GGTTTTTTGTAGTCAATCGATTGGCTCCAAGGTGAA
1 GGTTTTTTGTAGTCAATCGATTGGCTCCAAGGTGAA
65131 TTTCTTTTTT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.22, C:0.14, G:0.28, T:0.36
Consensus pattern (36 bp):
GGTTTTTTGTAGTCAATCGATTGGCTCCAAGGTGAA
Found at i:68927 original size:42 final size:42
Alignment explanation
Indices: 68868--68950 Score: 166
Period size: 42 Copynumber: 2.0 Consensus size: 42
68858 TTAATGACAG
68868 CAAAATCAAAGGGATTGGTCAATACCAGAATCAGTCACCAAA
1 CAAAATCAAAGGGATTGGTCAATACCAGAATCAGTCACCAAA
68910 CAAAATCAAAGGGATTGGTCAATACCAGAATCAGTCACCAA
1 CAAAATCAAAGGGATTGGTCAATACCAGAATCAGTCACCAA
68951 TTAAAGATAA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.45, C:0.22, G:0.17, T:0.17
Consensus pattern (42 bp):
CAAAATCAAAGGGATTGGTCAATACCAGAATCAGTCACCAAA
Found at i:73637 original size:42 final size:42
Alignment explanation
Indices: 73578--73704 Score: 245
Period size: 42 Copynumber: 3.0 Consensus size: 42
73568 AATTAATGAC
73578 AGCAAAATCAAAGGGATTGGTCAATACTAGAATCAGTCACCA
1 AGCAAAATCAAAGGGATTGGTCAATACTAGAATCAGTCACCA
73620 AGCAAAATCAAAGGGATTGGTCAATACTAGAATCAGTCACCA
1 AGCAAAATCAAAGGGATTGGTCAATACTAGAATCAGTCACCA
*
73662 AGCAAAATCAAAGGGATTGGTCAATACCAGAATCAGTCACCA
1 AGCAAAATCAAAGGGATTGGTCAATACTAGAATCAGTCACCA
73704 A
1 A
73705 TTAAAGATAA
Statistics
Matches: 84, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
42 84 1.00
ACGTcount: A:0.43, C:0.20, G:0.19, T:0.18
Consensus pattern (42 bp):
AGCAAAATCAAAGGGATTGGTCAATACTAGAATCAGTCACCA
Found at i:74229 original size:16 final size:16
Alignment explanation
Indices: 74204--74339 Score: 170
Period size: 16 Copynumber: 8.6 Consensus size: 16
74194 CAGGCAGTTT
74204 TTTCGGGTCATTCGGG
1 TTTCGGGTCATTCGGG
*
74220 TTTTGGGTCA-TCTGGG
1 TTTCGGGTCATTC-GGG
*
74236 TTT-GGGTTATTCGGG
1 TTTCGGGTCATTCGGG
74251 TTTCGGGTCATTCGGG
1 TTTCGGGTCATTCGGG
* *
74267 TCTCGGGTCATACGGG
1 TTTCGGGTCATTCGGG
*
74283 TTTCGGGTCATTTGGG
1 TTTCGGGTCATTCGGG
*
74299 TCTT-GGGTCATTTGGG
1 T-TTCGGGTCATTCGGG
*
74315 TTCCGGGTCATTCGGG
1 TTTCGGGTCATTCGGG
74331 TTTCGGGTC
1 TTTCGGGTC
74340 TACTAGGTCT
Statistics
Matches: 104, Mismatches: 11, Indels: 10
0.83 0.09 0.08
Matches are distributed among these distances:
15 14 0.13
16 88 0.85
17 2 0.02
ACGTcount: A:0.07, C:0.17, G:0.38, T:0.39
Consensus pattern (16 bp):
TTTCGGGTCATTCGGG
Found at i:75183 original size:16 final size:16
Alignment explanation
Indices: 75162--75280 Score: 116
Period size: 16 Copynumber: 7.4 Consensus size: 16
75152 GGTTAACTTG
* *
75162 TCGGGTTATTTGGGTT
1 TCGGGTCATTCGGGTT
*
75178 TCGGGTCATAC-GGTT
1 TCGGGTCATTCGGGTT
*
75193 CTCGGGTCATTCGGGAT
1 -TCGGGTCATTCGGGTT
* *
75210 ACAGGTCATTCGGGTT
1 TCGGGTCATTCGGGTT
* *
75226 TCGGGTCATTTGGGTC
1 TCGGGTCATTCGGGTT
75242 TCGGGTCA-TCTGGGTT
1 TCGGGTCATTC-GGGTT
* *
75258 GCGGGTCATTCGGGTC
1 TCGGGTCATTCGGGTT
75274 TCGGGTC
1 TCGGGTC
75281 GGGTGGGTTC
Statistics
Matches: 82, Mismatches: 17, Indels: 8
0.77 0.16 0.07
Matches are distributed among these distances:
15 5 0.06
16 72 0.88
17 5 0.06
ACGTcount: A:0.09, C:0.19, G:0.37, T:0.34
Consensus pattern (16 bp):
TCGGGTCATTCGGGTT
Found at i:75228 original size:48 final size:48
Alignment explanation
Indices: 75173--75280 Score: 137
Period size: 48 Copynumber: 2.2 Consensus size: 48
75163 CGGGTTATTT
*
75173 GGGTTTCGGGTCATACGGTTCTCGGGTCAT-TCGGGATACAGGTCATTC
1 GGGTTTCGGGTCATACGGGTCTCGGGTCATCT-GGGATACAGGTCATTC
** * * *
75221 GGGTTTCGGGTCATTTGGGTCTCGGGTCATCTGGGTTGCGGGTCATTC
1 GGGTTTCGGGTCATACGGGTCTCGGGTCATCTGGGATACAGGTCATTC
*
75269 GGGTCTCGGGTC
1 GGGTTTCGGGTC
75281 GGGTGGGTTC
Statistics
Matches: 52, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
48 51 0.98
49 1 0.02
ACGTcount: A:0.09, C:0.20, G:0.38, T:0.32
Consensus pattern (48 bp):
GGGTTTCGGGTCATACGGGTCTCGGGTCATCTGGGATACAGGTCATTC
Found at i:75288 original size:32 final size:32
Alignment explanation
Indices: 75221--75289 Score: 93
Period size: 32 Copynumber: 2.2 Consensus size: 32
75211 CAGGTCATTC
* * *
75221 GGGTTTCGGGTCATTTGGGTCTCGGGTCATCT
1 GGGTTGCGGGTCATTCGGGTCTCGGGTCAGCT
* *
75253 GGGTTGCGGGTCATTCGGGTCTCGGGTCGGGT
1 GGGTTGCGGGTCATTCGGGTCTCGGGTCAGCT
75285 GGGTT
1 GGGTT
75290 CAGATCGTTT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.04, C:0.17, G:0.45, T:0.33
Consensus pattern (32 bp):
GGGTTGCGGGTCATTCGGGTCTCGGGTCAGCT
Found at i:80697 original size:21 final size:21
Alignment explanation
Indices: 80655--80698 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
80645 AGGGCACATT
* * *
80655 GGTGCCCAGGCCAACCGGCTG
1 GGTGCCCAGGCAAAACGCCTG
*
80676 GGTGCGCAGGCAAAACGCCTG
1 GGTGCCCAGGCAAAACGCCTG
80697 GG
1 GG
80699 CGCACAGCCA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.18, C:0.32, G:0.41, T:0.09
Consensus pattern (21 bp):
GGTGCCCAGGCAAAACGCCTG
Found at i:83013 original size:21 final size:21
Alignment explanation
Indices: 82980--83027 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 21
82970 AAGAATTGTA
**
82980 GCTT-CTTGGAAATGGCTCTT
1 GCTTCCTTGGAAATCCCTCTT
*
83000 GCTTCCTTTGAAATCCCTCTT
1 GCTTCCTTGGAAATCCCTCTT
83021 GCATTCC
1 GC-TTCC
83028 CAAAGCATTG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
20 4 0.17
21 15 0.65
22 4 0.17
ACGTcount: A:0.15, C:0.29, G:0.17, T:0.40
Consensus pattern (21 bp):
GCTTCCTTGGAAATCCCTCTT
Found at i:84229 original size:29 final size:29
Alignment explanation
Indices: 84155--84229 Score: 77
Period size: 29 Copynumber: 2.7 Consensus size: 29
84145 AGTAACTGGA
84155 AAAAAT-AAAAAG-TAAAGAAAAATTAAC
1 AAAAATAAAAAAGATAAAGAAAAATTAAC
* * *
84182 TAAACTAAAAATTGA-AAAGAAAAA-TAAC
1 AAAAATAAAAA-AGATAAAGAAAAATTAAC
84210 GAAAAATAAAAAAGATAAAG
1 -AAAAATAAAAAAGATAAAG
84230 GTAAGAAATT
Statistics
Matches: 37, Mismatches: 6, Indels: 8
0.73 0.12 0.16
Matches are distributed among these distances:
27 4 0.11
28 10 0.27
29 23 0.62
ACGTcount: A:0.72, C:0.04, G:0.09, T:0.15
Consensus pattern (29 bp):
AAAAATAAAAAAGATAAAGAAAAATTAAC
Found at i:86423 original size:27 final size:28
Alignment explanation
Indices: 86393--86459 Score: 91
Period size: 27 Copynumber: 2.4 Consensus size: 28
86383 TTCACTATTT
* * * *
86393 AATTATGATAGTATTCTTTTTTTAACA-
1 AATTATGATAGTATTCTATGTTAAAAAC
86420 AATTATGATAGTATTCTATGTTAAAAAC
1 AATTATGATAGTATTCTATGTTAAAAAC
86448 AATTATGATAGT
1 AATTATGATAGT
86460 TCTTTCATGA
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
27 23 0.66
28 12 0.34
ACGTcount: A:0.39, C:0.06, G:0.10, T:0.45
Consensus pattern (28 bp):
AATTATGATAGTATTCTATGTTAAAAAC
Found at i:87244 original size:56 final size:59
Alignment explanation
Indices: 87154--87291 Score: 203
Period size: 56 Copynumber: 2.4 Consensus size: 59
87144 ACATTAAAAA
*
87154 AAAATTACAAATCACTTGTTTTACATATTGATTAAGTTGCAT-ATAGAAGT-GAA-T-AT
1 AAAATTACAAATCACTTGTTTTACATATTAATTAAGTTGCATAATAGAA-TAGAAGTAAT
*
87210 AAAATTACAAATCACTTGTTTTACATATTAATTAAGTTGCATACATATAATAGAAGTAAT
1 AAAATTACAAATCACTTGTTTTACATATTAATTAAGTTGCATA-ATAGAATAGAAGTAAT
*
87270 AAAATTACAAATCACTTTTTTT
1 AAAATTACAAATCACTTGTTTT
87292 TTTCCTTTTG
Statistics
Matches: 74, Mismatches: 3, Indels: 6
0.89 0.04 0.07
Matches are distributed among these distances:
56 41 0.55
57 1 0.01
58 8 0.11
59 1 0.01
60 23 0.31
ACGTcount: A:0.43, C:0.10, G:0.09, T:0.38
Consensus pattern (59 bp):
AAAATTACAAATCACTTGTTTTACATATTAATTAAGTTGCATAATAGAATAGAAGTAAT
Found at i:90325 original size:33 final size:33
Alignment explanation
Indices: 90187--90314 Score: 213
Period size: 33 Copynumber: 3.8 Consensus size: 33
90177 GATGACCCGT
90187 GCCGCCCCAGGAGGGCGGCTTACCATGGCTCAA
1 GCCGCCCCAGGAGGGCGGCTTACCATGGCTCAA
*
90220 GCCGCCCCAGGAGGACGGCTTACCATGGCTCAA
1 GCCGCCCCAGGAGGGCGGCTTACCATGGCTCAA
*
90253 GCCGCCCCAGGAGGGTGGCTTACCATGGCTCAA
1 GCCGCCCCAGGAGGGCGGCTTACCATGGCTCAA
90286 GCCGCCCCAGTG-GGGCGGCTTCACCATGG
1 GCCGCCCCAG-GAGGGCGGCTT-ACCATGG
90315 GCAGACCGCC
Statistics
Matches: 89, Mismatches: 4, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
33 81 0.91
34 8 0.09
ACGTcount: A:0.17, C:0.36, G:0.34, T:0.13
Consensus pattern (33 bp):
GCCGCCCCAGGAGGGCGGCTTACCATGGCTCAA
Found at i:90339 original size:66 final size:66
Alignment explanation
Indices: 90187--90339 Score: 188
Period size: 66 Copynumber: 2.3 Consensus size: 66
90177 GATGACCCGT
* *
90187 GCCGCCCCAGGAGGGCGGCTTACCATGGCTCAAGCCGCCCCAGGAGGACGGCTTACCATGGCTCA
1 GCCGCCCCACGAGGGCGGCTTACCATGGCTCAAGCCGCCCCAGGAGGACGGCTTACCATGGCGCA
90252 A
66 A
* * *
90253 GCCGCCCCAGGAGGGTGGCTTACCATGGCTCAAGCCGCCCCAGTG-GGGCGGCTTCACCATGG-G
1 GCCGCCCCACGAGGGCGGCTTACCATGGCTCAAGCCGCCCCAG-GAGGACGGCTT-ACCATGGCG
90316 C-A
64 CAA
*
90318 GACCGCCCTCCCGA-GGCGGCTT
1 G-CCGCCC-CACGAGGGCGGCTT
90340 CGCCACGTCT
Statistics
Matches: 77, Mismatches: 6, Indels: 8
0.85 0.07 0.09
Matches are distributed among these distances:
65 2 0.03
66 64 0.83
67 11 0.14
ACGTcount: A:0.16, C:0.37, G:0.33, T:0.13
Consensus pattern (66 bp):
GCCGCCCCACGAGGGCGGCTTACCATGGCTCAAGCCGCCCCAGGAGGACGGCTTACCATGGCGCA
A
Found at i:96515 original size:3 final size:3
Alignment explanation
Indices: 96494--96548 Score: 64
Period size: 3 Copynumber: 19.3 Consensus size: 3
96484 TCATCACTGC
*
96494 TAT TAT GAT T-T TA- TAT TAT TAT TA- TAT TAT TA- TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
96538 TAT TAT ATAT T
1 TAT TAT -TAT T
96549 TTTGGTAGAA
Statistics
Matches: 45, Mismatches: 2, Indels: 10
0.79 0.04 0.18
Matches are distributed among these distances:
2 8 0.18
3 34 0.76
4 3 0.07
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.64
Consensus pattern (3 bp):
TAT
Found at i:96515 original size:8 final size:8
Alignment explanation
Indices: 96510--96545 Score: 63
Period size: 8 Copynumber: 4.4 Consensus size: 8
96500 GATTTTATAT
96510 TATTATTA
1 TATTATTA
96518 TATTATTA
1 TATTATTA
96526 TATTATTA
1 TATTATTA
96534 TTATTATTA
1 -TATTATTA
96543 TAT
1 TAT
96546 ATTTTTGGTA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
8 19 0.70
9 8 0.30
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (8 bp):
TATTATTA
Found at i:96518 original size:19 final size:18
Alignment explanation
Indices: 96494--96548 Score: 74
Period size: 19 Copynumber: 2.9 Consensus size: 18
96484 TCATCACTGC
96494 TATTATGATTTTATATTAT
1 TATTAT-ATTTTATATTAT
96513 TATTATATTATTATATTAT
1 TATTATATT-TTATATTAT
*
96532 TATTATTATTATATATT
1 TATTA-TATTTTATATT
96549 TTTGGTAGAA
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
18 3 0.09
19 26 0.79
20 4 0.12
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.64
Consensus pattern (18 bp):
TATTATATTTTATATTAT
Found at i:96520 original size:11 final size:11
Alignment explanation
Indices: 96504--96540 Score: 58
Period size: 11 Copynumber: 3.4 Consensus size: 11
96494 TATTATGATT
96504 TTATATTATTA
1 TTATATTATTA
96515 TTATATTATTA
1 TTATATTATTA
96526 -TATTATTATTA
1 TTA-TATTATTA
96537 TTAT
1 TTAT
96541 TATATATTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
10 2 0.08
11 20 0.83
12 2 0.08
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (11 bp):
TTATATTATTA
Found at i:100972 original size:87 final size:87
Alignment explanation
Indices: 100849--101070 Score: 261
Period size: 87 Copynumber: 2.6 Consensus size: 87
100839 GACCACTCCG
* * *
100849 ATTTGAATTCAAAATATCCACCACCAAATCAGTTTCCAAAGATTTTGCATCATTACTAACCATAA
1 ATTTGAATTCAAAATATCCACCACCAAATCAGTTTCCAAAGATTTTGCACCATAACCAACCATAA
100914 CTCCATTAGGAAGATCACTAA-A
66 CTCCATTAGGAAGATCAC-AACA
* * * * *
100936 ATTTGAATTCAAACTATCCTCTACCATAAT-ATTTTCCAAAGATTTTGCACCATAACCACCCATA
1 ATTTGAATTCAAAATATCCACCACCA-AATCAGTTTCCAAAGATTTTGCACCATAACCAACCATA
101000 ACTCCATTAGGAAGATCACAATCA
65 ACTCCATTAGGAAGATCACAA-CA
* * * ** * *
101024 A-TTGAATTCAAATTATTCTCCACCTTATCAGTTTCCACAGAATTTGC
1 ATTTGAATTCAAAATATCCACCACCAAATCAGTTTCCAAAGATTTTGC
101071 GCCTAAAAAT
Statistics
Matches: 115, Mismatches: 16, Indels: 8
0.83 0.12 0.06
Matches are distributed among these distances:
86 4 0.03
87 106 0.92
88 5 0.04
ACGTcount: A:0.37, C:0.24, G:0.08, T:0.31
Consensus pattern (87 bp):
ATTTGAATTCAAAATATCCACCACCAAATCAGTTTCCAAAGATTTTGCACCATAACCAACCATAA
CTCCATTAGGAAGATCACAACA
Found at i:104927 original size:24 final size:23
Alignment explanation
Indices: 104899--104953 Score: 67
Period size: 23 Copynumber: 2.3 Consensus size: 23
104889 CTAATCCTAT
104899 CAAAGTGTCAAAAAAAAGG-GAGCG
1 CAAAGTGTC--AAAAAAGGAGAGCG
* *
104923 CAAAGTGTCACAAAAGGAGAGTG
1 CAAAGTGTCAAAAAAGGAGAGCG
104946 CAAAGTGT
1 CAAAGTGT
104954 TAGTTTTGAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
22 7 0.25
23 12 0.43
24 9 0.32
ACGTcount: A:0.45, C:0.13, G:0.29, T:0.13
Consensus pattern (23 bp):
CAAAGTGTCAAAAAAGGAGAGCG
Found at i:106421 original size:31 final size:31
Alignment explanation
Indices: 106376--106457 Score: 85
Period size: 31 Copynumber: 2.6 Consensus size: 31
106366 TAATTAATCC
* * *
106376 TAAATTAATGCAAATTAAAACAAAT-TAAGCGT
1 TAAATTAA-ACAAATTAAAA-AAATGAAAGCCT
* **
106408 TAAATTAAACAAATCATTAAAATGAAAGCCT
1 TAAATTAAACAAATTAAAAAAATGAAAGCCT
106439 TAAATTAAACAAATTAAAA
1 TAAATTAAACAAATTAAAA
106458 GCTGATAGAC
Statistics
Matches: 40, Mismatches: 9, Indels: 3
0.77 0.17 0.06
Matches are distributed among these distances:
30 4 0.10
31 28 0.70
32 8 0.20
ACGTcount: A:0.57, C:0.10, G:0.06, T:0.27
Consensus pattern (31 bp):
TAAATTAAACAAATTAAAAAAATGAAAGCCT
Found at i:106766 original size:33 final size:34
Alignment explanation
Indices: 106702--106770 Score: 131
Period size: 34 Copynumber: 2.1 Consensus size: 34
106692 ACAAATGTAA
106702 TTGTTTTTATTAGTAAACCTCTTTTGTAGACTCT
1 TTGTTTTTATTAGTAAACCTCTTTTGTAGACTCT
106736 TTGTTTTTATTAGTAAACCTC-TTTGTAGACTCT
1 TTGTTTTTATTAGTAAACCTCTTTTGTAGACTCT
106769 TT
1 TT
106771 ATTTGTTTAG
Statistics
Matches: 35, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
33 14 0.40
34 21 0.60
ACGTcount: A:0.20, C:0.14, G:0.12, T:0.54
Consensus pattern (34 bp):
TTGTTTTTATTAGTAAACCTCTTTTGTAGACTCT
Found at i:107076 original size:10 final size:10
Alignment explanation
Indices: 107061--107090 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
107051 TTTGATCAAC
107061 TCGGGTTTGG
1 TCGGGTTTGG
107071 TCGGGTTTGG
1 TCGGGTTTGG
*
107081 TCAGGTTTGG
1 TCGGGTTTGG
107091 GCTCGGGCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.03, C:0.10, G:0.47, T:0.40
Consensus pattern (10 bp):
TCGGGTTTGG
Found at i:107851 original size:32 final size:32
Alignment explanation
Indices: 107815--107886 Score: 117
Period size: 32 Copynumber: 2.2 Consensus size: 32
107805 CCTGAACCTG
* *
107815 AACCCGAAAAAACCCGAAGCCGAAAAAGCTCA
1 AACCCGAAAAAACACGAACCCGAAAAAGCTCA
*
107847 AACCCGAAAAAACACGAACCCGAAAAAGTTCA
1 AACCCGAAAAAACACGAACCCGAAAAAGCTCA
107879 AACCCGAA
1 AACCCGAA
107887 TCCGAAAAAG
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
32 37 1.00
ACGTcount: A:0.51, C:0.31, G:0.14, T:0.04
Consensus pattern (32 bp):
AACCCGAAAAAACACGAACCCGAAAAAGCTCA
Found at i:107866 original size:54 final size:54
Alignment explanation
Indices: 107820--107926 Score: 142
Period size: 54 Copynumber: 2.0 Consensus size: 54
107810 ACCTGAACCC
*
107820 GAAAAAACCCGAAGCCGAAAAAGCTCAAACCCGAAAAAACACGAACCCGAAAAA
1 GAAAAAACCCGAAGCCGAAAAAGCTCAAACCCAAAAAAACACGAACCCGAAAAA
*** * * * *
107874 GTTCAAACCCGAATCCGAAAAAGCTCAAACCTAAAAAAACCCGAATCCGAAAA
1 GAAAAAACCCGAAGCCGAAAAAGCTCAAACCCAAAAAAACACGAACCCGAAAA
107927 TTTATGAAAA
Statistics
Matches: 45, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
54 45 1.00
ACGTcount: A:0.52, C:0.28, G:0.13, T:0.07
Consensus pattern (54 bp):
GAAAAAACCCGAAGCCGAAAAAGCTCAAACCCAAAAAAACACGAACCCGAAAAA
Found at i:107882 original size:16 final size:16
Alignment explanation
Indices: 107815--107886 Score: 72
Period size: 16 Copynumber: 4.5 Consensus size: 16
107805 CCTGAACCTG
* * *
107815 AACCCGAAAAAACCCG
1 AACCCGAAAAAGCTCA
*
107831 AAGCCGAAAAAGCTCA
1 AACCCGAAAAAGCTCA
* * *
107847 AACCCGAAAAAACACG
1 AACCCGAAAAAGCTCA
*
107863 AACCCGAAAAAGTTCA
1 AACCCGAAAAAGCTCA
107879 AACCCGAA
1 AACCCGAA
107887 TCCGAAAAAG
Statistics
Matches: 44, Mismatches: 12, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
16 44 1.00
ACGTcount: A:0.51, C:0.31, G:0.14, T:0.04
Consensus pattern (16 bp):
AACCCGAAAAAGCTCA
Found at i:107886 original size:22 final size:22
Alignment explanation
Indices: 107856--107904 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
107846 AAACCCGAAA
* *
107856 AAACACGAACCCGAAAAAGTTC
1 AAACCCGAACCCGAAAAAGCTC
*
107878 AAACCCGAATCCGAAAAAGCTC
1 AAACCCGAACCCGAAAAAGCTC
107900 AAACC
1 AAACC
107905 TAAAAAAACC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.49, C:0.31, G:0.12, T:0.08
Consensus pattern (22 bp):
AAACCCGAACCCGAAAAAGCTC
Found at i:108110 original size:16 final size:15
Alignment explanation
Indices: 108087--108167 Score: 60
Period size: 15 Copynumber: 5.2 Consensus size: 15
108077 CCCGAACCCG
108087 AATTAACCTGACCGA
1 AATTAACCTGACCGA
*
108102 AATTCAACCCGAACCCG-
1 AATT-AACCTG-A-CCGA
108119 AATTAACCTGATCC-A
1 AATTAACCTGA-CCGA
*
108134 AATTAACCCGAACCTG-
1 AATTAACCTG-ACC-GA
*
108150 AATTAACCTGACCCA
1 AATTAACCTGACCGA
108165 AAT
1 AAT
108168 CCAACCCGAA
Statistics
Matches: 52, Mismatches: 6, Indels: 16
0.70 0.08 0.22
Matches are distributed among these distances:
15 24 0.46
16 20 0.38
17 5 0.10
18 3 0.06
ACGTcount: A:0.40, C:0.31, G:0.10, T:0.20
Consensus pattern (15 bp):
AATTAACCTGACCGA
Found at i:108116 original size:32 final size:31
Alignment explanation
Indices: 108075--108182 Score: 164
Period size: 32 Copynumber: 3.4 Consensus size: 31
108065 ATCCAAACAG
108075 AACCCGAACCCGAATTAACCTGACCGAAATTC
1 AACCCGAACCCGAATTAACCTGACC-AAATTC
108107 AACCCGAACCCGAATTAACCTGATCCAAATT-
1 AACCCGAACCCGAATTAACCTGA-CCAAATTC
* *
108138 AACCCGAACCTGAATTAACCTGACCCAAATCC
1 AACCCGAACCCGAATTAACCTGA-CCAAATTC
108170 AACCCGAACCCGA
1 AACCCGAACCCGA
108183 CTCAAGCCCA
Statistics
Matches: 70, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
31 28 0.40
32 40 0.57
33 2 0.03
ACGTcount: A:0.38, C:0.36, G:0.11, T:0.15
Consensus pattern (31 bp):
AACCCGAACCCGAATTAACCTGACCAAATTC
Found at i:110999 original size:42 final size:41
Alignment explanation
Indices: 110932--111129 Score: 135
Period size: 41 Copynumber: 4.9 Consensus size: 41
110922 ACCCAATATC
* * * *
110932 CAAAGTCCACAAACATAATCCTAACACAAGGGCAACTCTTTT
1 CAAAGTCCTCAAACACATTCATAACACAAGGGCAA-TCTTTT
* ****
110974 CAAAGTCCTCAAACACATTCATAACAC-AGAGGCATTAACAT
1 CAAAGTCCTCAAACACATTCATAACACAAG-GGCAATCTTTT
* * *
111015 CAATGTCCCCAAACACAATT-ATAACACAGGGGCAATCATTTCT
1 CAAAGTCCTCAAACAC-ATTCATAACACAAGGGCAATC-TTT-T
* *
111058 CAAAGTCCTCAAGCACATTCATAACAC-AGAGGC-ATCTATAT
1 CAAAGTCCTCAAACACATTCATAACACAAG-GGCAATCT-TTT
*
111099 CAAAGTCC-CTAA-ACA--CA-AACACAAGGGCAAT
1 CAAAGTCCTCAAACACATTCATAACACAAGGGCAAT
111130 TTCCTCTATA
Statistics
Matches: 122, Mismatches: 24, Indels: 25
0.71 0.14 0.15
Matches are distributed among these distances:
36 8 0.07
37 6 0.05
39 3 0.02
40 2 0.02
41 40 0.33
42 39 0.32
43 24 0.20
ACGTcount: A:0.41, C:0.28, G:0.11, T:0.20
Consensus pattern (41 bp):
CAAAGTCCTCAAACACATTCATAACACAAGGGCAATCTTTT
Found at i:111030 original size:41 final size:41
Alignment explanation
Indices: 110973--111115 Score: 148
Period size: 41 Copynumber: 3.4 Consensus size: 41
110963 GCAACTCTTT
*
110973 TCAAAGTCCTCAAACACATTCATAACACAGAGGCAT-TAACA
1 TCAAAGTCCCCAAACACATTCATAACACAGAGGCATCT-ACA
* * *
111014 TCAATGTCCCCAAACACAATT-ATAACACAGGGGCAATCATTTC-
1 TCAAAGTCCCCAAACAC-ATTCATAACACAGAGGC-ATC--TACA
* * *
111057 TCAAAGTCCTCAAGCACATTCATAACACAGAGGCATCTATA
1 TCAAAGTCCCCAAACACATTCATAACACAGAGGCATCTACA
*
111098 TCAAAGTCCCTAAACACA
1 TCAAAGTCCCCAAACACA
111116 AACACAAGGG
Statistics
Matches: 82, Mismatches: 13, Indels: 14
0.75 0.12 0.13
Matches are distributed among these distances:
40 1 0.01
41 42 0.51
42 11 0.13
43 26 0.32
44 1 0.01
45 1 0.01
ACGTcount: A:0.41, C:0.28, G:0.10, T:0.21
Consensus pattern (41 bp):
TCAAAGTCCCCAAACACATTCATAACACAGAGGCATCTACA
Found at i:111081 original size:84 final size:83
Alignment explanation
Indices: 110932--111116 Score: 248
Period size: 84 Copynumber: 2.2 Consensus size: 83
110922 ACCCAATATC
* * **
110932 CAAAGTCCACAAACATAATCCTAACACAAGGGCAACTCTTTTCAAAGTCCTCAAACACATTCATA
1 CAAAGTCCCCAAACACAATTATAACACAAGGGCAACTCTTTTCAAAGTCCTCAAACACATTCATA
110997 ACACAGAGGCAT-TAACAT
66 ACACAGAGGCATCT-ACAT
* * *
111015 CAATGTCCCCAAACACAATTATAACACAGGGGCAA-TCATTTCTCAAAGTCCTCAAGCACATTCA
1 CAAAGTCCCCAAACACAATTATAACACAAGGGCAACTC-TTT-TCAAAGTCCTCAAACACATTCA
*
111079 TAACACAGAGGCATCTATAT
64 TAACACAGAGGCATCTACAT
*
111099 CAAAGTCCCTAAACACAA
1 CAAAGTCCCCAAACACAA
111117 ACACAAGGGC
Statistics
Matches: 89, Mismatches: 10, Indels: 5
0.86 0.10 0.05
Matches are distributed among these distances:
82 2 0.02
83 32 0.36
84 54 0.61
85 1 0.01
ACGTcount: A:0.41, C:0.28, G:0.10, T:0.21
Consensus pattern (83 bp):
CAAAGTCCCCAAACACAATTATAACACAAGGGCAACTCTTTTCAAAGTCCTCAAACACATTCATA
ACACAGAGGCATCTACAT
Found at i:111229 original size:2 final size:2
Alignment explanation
Indices: 111224--111254 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
111214 ATATCGTGTG
111224 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
111255 TACGTTGGGC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:112290 original size:21 final size:21
Alignment explanation
Indices: 112236--112295 Score: 66
Period size: 21 Copynumber: 2.9 Consensus size: 21
112226 TTAAGAGCAA
*
112236 GAATATTCCAATCGATTCTAT
1 GAATATTCCAATCGATTCTAG
** * **
112257 GTCTACTATAATCGATTCTAG
1 GAATATTCCAATCGATTCTAG
112278 GAATATTCCAATCGATTC
1 GAATATTCCAATCGATTC
112296 CAAGTTATGC
Statistics
Matches: 28, Mismatches: 11, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.37
Consensus pattern (21 bp):
GAATATTCCAATCGATTCTAG
Found at i:122111 original size:19 final size:20
Alignment explanation
Indices: 122087--122134 Score: 80
Period size: 19 Copynumber: 2.5 Consensus size: 20
122077 GTTTACTCAT
122087 TTTAATTTAGCCACGTGG-A
1 TTTAATTTAGCCACGTGGAA
122106 TTTAATTTAGCCACGTGGAA
1 TTTAATTTAGCCACGTGGAA
*
122126 TTTTATTTA
1 TTTAATTTA
122135 AACTAGAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
19 18 0.67
20 9 0.33
ACGTcount: A:0.27, C:0.12, G:0.17, T:0.44
Consensus pattern (20 bp):
TTTAATTTAGCCACGTGGAA
Found at i:122403 original size:19 final size:18
Alignment explanation
Indices: 122361--122399 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
122351 TTCCGAGTTA
122361 GGGTTTCAAAATAATTTG
1 GGGTTTCAAAATAATTTG
122379 GGGTTTCAAAATAATTTG
1 GGGTTTCAAAATAATTTG
122397 GGG
1 GGG
122400 GTTTTGATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.31, C:0.05, G:0.28, T:0.36
Consensus pattern (18 bp):
GGGTTTCAAAATAATTTG
Found at i:122728 original size:96 final size:96
Alignment explanation
Indices: 122564--122762 Score: 380
Period size: 96 Copynumber: 2.1 Consensus size: 96
122554 TGCTACTAAT
122564 TTGGGTTGTTTATGTGGCTGATATGGATTTTCTAAGTTTTATGCTATGTATACTAATTTAATATA
1 TTGGGTTGTTTATGTGGCTGATATGGATTTTCTAAGTTTTATGCTATGTATACTAATTTAATATA
* *
122629 GTAAGTGGGTATATTCTTTATGTTTTATGTG
66 GTAAGTGGGTATATTCCTTATGCTTTATGTG
122660 TTGGGTTGTTTATGTGGCTGATATGGATTTTCTAAGTTTTATGCTATGTATACTAATTTAATATA
1 TTGGGTTGTTTATGTGGCTGATATGGATTTTCTAAGTTTTATGCTATGTATACTAATTTAATATA
122725 GTAAGTGGGTATATTCCTTATGCTTTATGTG
66 GTAAGTGGGTATATTCCTTATGCTTTATGTG
122756 TTGGGTT
1 TTGGGTT
122763 TTTCACATAG
Statistics
Matches: 101, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
96 101 1.00
ACGTcount: A:0.22, C:0.06, G:0.23, T:0.49
Consensus pattern (96 bp):
TTGGGTTGTTTATGTGGCTGATATGGATTTTCTAAGTTTTATGCTATGTATACTAATTTAATATA
GTAAGTGGGTATATTCCTTATGCTTTATGTG
Found at i:126943 original size:21 final size:21
Alignment explanation
Indices: 126910--126976 Score: 107
Period size: 21 Copynumber: 3.2 Consensus size: 21
126900 TTCATTGCAA
*
126910 CTCACTCTTCAACTTGAAATT
1 CTCATTCTTCAACTTGAAATT
*
126931 CTCATTCTGCAACTTGAAATT
1 CTCATTCTTCAACTTGAAATT
*
126952 CTCATTCTTCAAGTTGAAATT
1 CTCATTCTTCAACTTGAAATT
126973 CTCA
1 CTCA
126977 GCAATAATTT
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 42 1.00
ACGTcount: A:0.28, C:0.25, G:0.07, T:0.39
Consensus pattern (21 bp):
CTCATTCTTCAACTTGAAATT
Found at i:130331 original size:12 final size:12
Alignment explanation
Indices: 130294--130332 Score: 50
Period size: 10 Copynumber: 3.6 Consensus size: 12
130284 TAAAAACACA
130294 TATAAAAGTAGC
1 TATAAAAGTAGC
130306 -A-AAAAGTA--
1 TATAAAAGTAGC
130314 TATAAAAGTAGC
1 TATAAAAGTAGC
130326 TATAAAA
1 TATAAAA
130333 ACATGCATAA
Statistics
Matches: 23, Mismatches: 0, Indels: 8
0.74 0.00 0.26
Matches are distributed among these distances:
9 1 0.04
10 14 0.61
11 1 0.04
12 7 0.30
ACGTcount: A:0.59, C:0.05, G:0.13, T:0.23
Consensus pattern (12 bp):
TATAAAAGTAGC
Found at i:132809 original size:28 final size:27
Alignment explanation
Indices: 132757--132817 Score: 70
Period size: 27 Copynumber: 2.2 Consensus size: 27
132747 TAAAGAAAAC
132757 AATTAAACTAAAAATCAAAACAAAGCA
1 AATTAAACTAAAAATCAAAACAAAGCA
* *
132784 AATTAAA-TATAAATCTAAATCTAAAGCA
1 AATTAAACTAAAAATC-AAAAC-AAAGCA
*
132812 GATTAA
1 AATTAA
132818 TAAAGCAAAC
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
26 7 0.24
27 11 0.38
28 11 0.38
ACGTcount: A:0.61, C:0.11, G:0.05, T:0.23
Consensus pattern (27 bp):
AATTAAACTAAAAATCAAAACAAAGCA
Found at i:135038 original size:18 final size:18
Alignment explanation
Indices: 135015--135049 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
135005 CCTCTTGCAT
*
135015 GAAAAACTTTTTTTTAAA
1 GAAAAACATTTTTTTAAA
*
135033 GAAAAAGATTTTTTTAA
1 GAAAAACATTTTTTTAA
135050 CTACCCTTCT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.46, C:0.03, G:0.09, T:0.43
Consensus pattern (18 bp):
GAAAAACATTTTTTTAAA
Found at i:135307 original size:24 final size:24
Alignment explanation
Indices: 135262--135308 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 24
135252 AATCATTCTT
*
135262 AAAAATTCAAAGCAATCATCAATC
1 AAAAATTCAAAGCAATAATCAATC
*
135286 AAAAA-TCAAATCAATAACTCAAT
1 AAAAATTCAAAGCAATAA-TCAAT
135309 ATAAGCATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 10 0.50
24 10 0.50
ACGTcount: A:0.57, C:0.19, G:0.02, T:0.21
Consensus pattern (24 bp):
AAAAATTCAAAGCAATAATCAATC
Found at i:144068 original size:39 final size:38
Alignment explanation
Indices: 143956--144088 Score: 135
Period size: 37 Copynumber: 3.5 Consensus size: 38
143946 ACTCGTACCA
* * * * * *
143956 CAGGGAGTTAAACTGATGGTAAGAGTGGATCCGTACTT
1 CAGGGGGTTAAACTGTTGGTAAGAGTGAACCCGTGCCT
* * *
143994 CA-AGGGTTAAACTGTTGGTAAGAGTGGACCTGTGCCT
1 CAGGGGGTTAAACTGTTGGTAAGAGTGAACCCGTGCCT
* *
144031 TAGGGGGTTAAACTGATTGGTAATAGTGAACCCGTGCCT
1 CAGGGGGTTAAACTG-TTGGTAAGAGTGAACCCGTGCCT
*
144070 CAGGGGGTT-AAGTGTTGGT
1 CAGGGGGTTAAACTGTTGGT
144089 TAGACTCGAA
Statistics
Matches: 79, Mismatches: 14, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
37 34 0.43
38 17 0.22
39 28 0.35
ACGTcount: A:0.25, C:0.14, G:0.34, T:0.28
Consensus pattern (38 bp):
CAGGGGGTTAAACTGTTGGTAAGAGTGAACCCGTGCCT
Done.