Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006686.1 Corchorus capsularis cultivar CVL-1 contig06707, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19688

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
80--147
26
2.6
26
84
9
93
35
1
10
52
1.44
104--147
15
3.2
15
72
24
51
36
0
9
54
1.32
156--214
25
2.5
24
83
5
66
44
1
20
33
1.62
1490--1519
2
15.0
2
100
0
60
50
0
0
50
1.00
1549--1615
32
2.1
32
88
0
98
41
20
4
32
1.73
2241--2286
18
2.6
19
83
10
62
30
0
2
67
1.03
4341--4405
29
2.2
29
80
0
76
44
9
13
32
1.76
4349--4417
29
2.4
29
78
2
77
39
11
15
33
1.84
4596--4626
2
15.5
2
100
0
62
48
0
0
51
1.00
7361--7419
28
2.1
28
87
6
84
49
13
28
8
1.71
8144--8401
106
2.5
105
89
3
378
41
8
8
41
1.67
9026--9207
90
2.0
90
95
0
328
20
15
24
39
1.92
14509--14534
2
13.0
2
100
0
52
50
0
0
50
1.00
15746--16005
109
2.4
109
94
2
441
38
10
1
50
1.43
16676--16798
60
2.0
60
100
0
246
40
6
8
44
1.60
16980--17031
9
5.3
9
74
17
50
9
9
9
71
1.32
16980--17040
31
2.0
31
100
0
122
14
9
9
65
1.46
17051--17112
22
2.8
23
82
4
83
41
11
11
35
1.77
17115--17155
22
1.9
21
90
5
64
39
4
17
39
1.71
19063--19313
131
1.9
130
95
2
459
34
10
8
46
1.69

Tables:   1

The End!