Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006687.1 Corchorus capsularis cultivar CVL-1 contig06708, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24024

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55--107
13
3.6
14
76
16
54
32
5
7
54
1.52
160--204
23
2.0
23
86
0
63
37
6
4
51
1.49
2660--2687
1
28.0
1
100
0
56
100
0
0
0
0.00
4601--4688
43
2.0
44
91
8
144
27
18
29
25
1.98
7105--7184
29
2.7
29
84
1
79
35
17
30
17
1.93
7117--7211
29
3.2
29
81
4
100
36
18
27
16
1.93
11764--11797
15
2.2
16
89
5
52
47
11
8
32
1.71
19456--19521
29
2.2
31
83
5
82
27
16
19
36
1.93
19785--19811
1
27.0
1
100
0
54
0
0
0
100
0.00
22636--22701
31
2.2
31
88
2
107
50
4
15
30
1.64
22917--22965
22
2.2
22
82
7
55
32
16
2
48
1.57
22990--23054
23
2.9
22
79
4
67
40
15
12
32
1.84
22984--23230
22
11.1
22
75
10
87
38
16
9
36
1.81
22991--23420
44
10.0
42
69
13
184
36
16
9
38
1.80
23104--23309
22
9.5
23
72
14
120
34
15
8
41
1.77
23106--23229
45
2.8
46
84
6
148
37
14
8
39
1.76
23364--23415
19
2.7
20
90
6
88
26
17
11
44
1.83
23539--23667
66
2.0
66
82
3
161
34
15
10
40
1.81
23493--23735
22
11.0
22
73
4
121
33
13
10
41
1.80
23495--23661
88
1.9
88
81
4
203
34
14
10
41
1.79
23520--23750
22
10.5
22
75
8
123
32
14
10
41
1.80
23945--24010
22
2.9
22
77
8
62
40
19
7
31
1.80

Tables:   1

The End!