Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006690.1 Corchorus capsularis cultivar CVL-1 contig06711, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56124

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2453--2490
13
3.1
13
77
14
53
50
0
15
34
1.45
5503--5973
48
9.9
48
86
3
612
12
26
24
36
1.91
10223--10279
30
1.9
29
85
3
78
24
26
15
33
1.95
11214--11255
22
1.9
22
85
0
57
26
23
21
28
1.99
11210--11313
52
2.0
52
92
0
172
25
26
22
25
2.00
11339--11384
22
2.1
22
87
0
65
23
26
26
23
2.00
13108--13138
15
2.0
16
93
6
55
58
6
6
29
1.48
14275--14325
17
3.1
16
76
18
50
25
23
15
35
1.94
18715--18880
44
3.7
44
91
4
253
47
24
11
16
1.79
20794--20964
36
4.9
34
83
9
186
38
8
19
33
1.82
20830--20889
20
3.2
19
68
18
54
38
10
15
36
1.80
22199--24033
881
2.1
883
96
0
3404
29
16
14
39
1.88
26649--26701
23
2.2
24
87
9
74
75
0
1
22
0.90
26665--26704
15
2.5
17
84
8
57
80
0
0
20
0.72
26668--26704
16
2.4
15
90
4
56
81
0
0
18
0.70
27217--27642
49
8.7
49
86
4
542
21
27
18
32
1.97
27217--27690
97
4.8
97
83
5
539
21
27
17
32
1.96
27220--27732
49
10.5
48
82
6
471
21
27
17
32
1.96
28727--28821
45
2.2
43
87
9
131
33
5
21
40
1.75
32627--32837
110
1.9
109
92
4
354
35
18
5
39
1.75
33628--33671
21
2.1
21
82
0
52
22
25
11
40
1.87
33721--33791
33
2.2
33
84
5
90
15
40
26
16
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35650--35679
15
2.0
15
93
0
51
20
16
0
63
1.31
35730--35809
42
1.9
42
85
10
110
26
20
3
50
1.65
35763--35813
25
2.0
25
92
0
84
25
19
0
54
1.44
35738--35847
42
2.5
43
78
12
109
24
23
3
48
1.67
35774--35880
44
2.5
42
80
14
112
23
26
2
47
1.65
35872--35908
14
2.6
14
95
0
65
18
21
5
54
1.64
35923--35958
14
2.6
14
86
0
54
19
16
2
61
1.47
36213--36334
38
3.2
38
92
0
208
26
15
6
51
1.67
37108--37215
51
2.1
50
91
3
171
38
14
4
41
1.67
40270--40338
27
2.6
27
88
0
102
44
20
17
17
1.86
53030--53109
42
1.9
42
82
10
101
27
20
3
48
1.66
53063--53113
25
2.0
25
92
0
84
25
19
0
54
1.44
53074--53180
44
2.5
42
80
14
112
23
26
2
47
1.65
53416--53601
38
4.9
38
82
6
211
26
16
6
49
1.71
53416--53601
76
2.5
76
85
6
238
26
16
6
49
1.71
54411--54518
51
2.1
50
91
3
171
38
14
4
41
1.67

Tables:   1

The End!