Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006693.1 Corchorus capsularis cultivar CVL-1 contig06714, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68515

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
848--961
45
2.5
45
91
0
183
37
13
24
24
1.91
3491--3999
22
23.0
21
68
15
101
38
11
13
36
1.81
3509--3882
44
8.4
43
70
14
163
38
11
12
37
1.79
3508--3893
178
2.2
178
93
0
648
38
11
12
37
1.80
5869--5913
23
2.0
21
87
8
63
40
0
2
57
1.11
11791--11825
2
18.0
2
94
5
63
48
0
0
51
1.00
14403--14435
16
2.0
17
94
5
59
0
15
0
84
0.61
16355--16413
2
30.0
2
80
10
68
45
1
0
52
1.10
17025--17131
52
2.0
54
89
5
164
32
32
2
31
1.72
26787--26818
15
2.1
16
94
5
57
40
12
0
46
1.42
30128--30172
20
2.2
20
84
4
54
66
8
8
15
1.43
31450--31481
11
2.9
11
90
0
55
43
18
0
37
1.51
31427--31481
19
2.6
22
75
21
64
40
18
1
40
1.61
39266--39301
2
18.0
2
100
0
72
50
0
0
50
1.00
43421--43458
6
6.5
6
96
3
69
31
0
13
55
1.38
45375--45582
103
2.0
103
100
0
416
25
13
18
42
1.87
45627--45651
13
1.9
13
100
0
50
16
0
28
56
1.41
45843--45911
33
2.1
33
97
0
129
23
8
20
47
1.77
56512--56555
2
22.0
2
95
0
79
47
0
2
50
1.13
63735--63815
41
2.0
42
82
7
103
25
23
18
32
1.97
66307--66349
20
2.2
20
86
0
59
13
23
18
44
1.86
66444--66643
104
1.9
105
90
1
321
33
18
19
29
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
66408--66671
105
2.5
105
85
2
316
34
17
17
31
1.93

Tables:   1

The End!