Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01006694.1 Corchorus capsularis cultivar CVL-1 contig06715, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2942
ACGTcount: A:0.30, C:0.16, G:0.17, T:0.37


Found at i:529 original size:19 final size:18

Alignment explanation


    Indices: 505--542  Score: 58
    Period size: 19  Copynumber: 2.1  Consensus size: 18

        495 GATCAAGATT

                     *         
        505 ATTTGAAGATAATTTGAAG
          1 ATTTGAAGACAA-TTGAAG

                              
        524 ATTTGAAGACAATTGAAG
          1 ATTTGAAGACAATTGAAG

             
        542 A
          1 A

        543 ATTCATTCAA


Statistics
Matches: 18,  Mismatches: 1, Indels: 1
        0.90            0.05        0.05

Matches are distributed among these distances:
  18    7  0.39
  19   11  0.61

ACGTcount: A:0.45, C:0.03, G:0.21, T:0.32


Consensus pattern (18 bp):   
ATTTGAAGACAATTGAAG
Done.