Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006696.1 Corchorus capsularis cultivar CVL-1 contig06717, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  29196

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
880--943
19
3.4
20
77
12
73
28
3
0
68
1.04
879--940
29
2.2
27
80
11
70
25
3
0
70
1.02
937--1005
31
2.3
31
84
2
86
40
17
13
28
1.87
947--1014
31
2.2
31
91
0
109
39
16
16
27
1.89
4890--4945
28
2.0
28
86
3
78
48
17
8
25
1.76
8301--8329
15
1.9
15
100
0
58
6
24
48
20
1.74
9286--9346
13
4.6
14
70
22
51
49
3
1
45
1.28
10785--10839
28
1.9
29
88
3
85
69
5
16
9
1.34
11462--11666
102
2.0
102
95
0
365
27
20
19
32
1.96
12381--13329
473
2.0
471
96
1
1758
32
9
7
50
1.63
14095--14120
2
13.0
2
100
0
52
50
0
0
50
1.00
18150--18196
26
1.9
25
87
12
71
14
14
10
59
1.61
24666--24697
2
16.0
2
100
0
64
50
0
0
50
1.00
25093--25192
51
2.0
50
88
3
148
46
8
11
35
1.69

Tables:   1

The End!