Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006699.1 Corchorus capsularis cultivar CVL-1 contig06720, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  28488

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3759--3815
28
2.0
28
100
0
114
43
10
7
38
1.66
8490--8551
31
2.0
31
93
0
106
29
19
6
45
1.75
9561--9585
7
3.6
7
100
0
50
44
12
28
16
1.83
10370--10398
14
2.1
14
100
0
58
13
20
13
51
1.75
12274--12321
24
2.0
24
95
0
87
29
18
20
31
1.97
15009--15049
21
2.1
18
86
13
55
24
26
12
36
1.91
17423--18607
37
32.1
37
74
10
948
23
16
15
45
1.85
17415--18607
74
16.2
74
89
2
1260
22
16
15
45
1.85
18780--18807
14
2.0
14
100
0
56
57
21
0
21
1.41
18982--19016
7
5.0
7
100
0
70
57
14
0
28
1.38
19043--19122
35
2.3
35
80
4
90
48
13
5
32
1.64
19084--19140
28
2.0
28
86
6
80
38
19
10
31
1.86
24702--24743
2
21.0
2
100
0
84
50
0
0
50
1.00
24866--24893
2
14.0
2
100
0
56
50
0
0
50
1.00
28106--28477
22
16.8
22
68
9
82
38
13
9
38
1.77
28104--28276
44
3.9
44
65
7
109
36
12
8
42
1.73
28419--28476
23
2.5
23
91
0
89
41
12
5
41
1.64

Tables:   1

The End!