Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006700.1 Corchorus capsularis cultivar CVL-1 contig06721, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25628

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3665--4323
67
10.0
68
77
8
614
21
20
15
42
1.88
3666--4300
136
4.8
134
80
10
673
21
20
15
42
1.89
7769--7798
15
1.9
16
93
6
53
53
26
0
20
1.46
12388--12436
21
2.3
21
85
0
62
28
28
32
10
1.90
13072--13235
83
2.0
83
98
0
319
26
18
16
39
1.91
14658--14881
30
7.6
28
72
22
117
39
28
12
19
1.88
14727--14881
56
2.7
60
82
9
196
38
30
12
18
1.88
16505--16537
2
16.0
2
93
6
57
48
3
0
48
1.17
17631--17675
23
2.0
23
86
0
63
8
24
35
31
1.86
17592--17661
16
4.5
15
69
15
52
10
20
35
34
1.86
17932--18013
42
2.0
42
100
0
164
37
4
17
40
1.71
18532--18622
32
2.8
32
85
3
112
12
17
31
38
1.87
18547--18637
16
5.7
16
74
10
78
12
17
35
35
1.87
18542--18644
32
3.3
31
85
5
120
11
17
34
35
1.86
18697--18747
26
1.9
27
88
4
77
3
13
50
31
1.60
19522--19625
52
2.0
52
92
0
172
35
14
22
27
1.93
20106--20162
26
2.2
25
84
9
78
21
17
1
59
1.46
22254--22334
38
2.2
37
82
10
103
44
4
3
46
1.42
22275--22335
25
2.5
24
77
20
63
45
1
3
49
1.28
25418--25484
25
2.8
24
82
8
84
35
23
0
40
1.55
25494--25561
26
2.6
26
90
0
109
54
10
1
33
1.43
25494--25597
52
2.0
51
81
9
122
53
9
1
34
1.45

Tables:   1

The End!