Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006701.1 Corchorus capsularis cultivar CVL-1 contig06722, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52424

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
184--229
21
2.1
22
88
4
67
36
8
41
13
1.75
2090--2158
6
11.5
6
73
17
63
1
17
43
37
1.58
2044--2133
31
2.9
31
94
1
153
3
13
40
43
1.60
2044--2134
16
5.8
16
90
2
148
3
13
39
43
1.60
2123--2156
17
1.9
18
94
5
61
0
20
52
26
1.46
2907--2950
16
2.6
17
86
10
56
0
20
54
25
1.45
2907--2950
6
7.8
6
85
14
58
0
20
54
25
1.45
4592--4724
69
1.9
69
92
0
221
33
13
16
36
1.88
4931--4990
21
3.0
21
78
7
79
38
13
20
28
1.90
5266--5299
13
2.6
13
85
0
50
5
5
0
88
0.64
5410--5459
25
2.0
25
100
0
100
40
0
20
40
1.52
16717--17355
39
16.4
39
83
3
689
32
26
23
18
1.97
21453--21488
19
1.9
19
88
5
56
22
8
16
52
1.70
33566--33600
16
2.3
15
95
5
61
40
2
0
57
1.14
42039--42075
6
6.3
6
96
3
67
51
13
0
35
1.41
43407--43438
11
2.9
11
90
0
55
43
18
0
37
1.51
45663--45770
54
2.0
54
100
0
216
31
9
27
31
1.88
46766--46800
2
18.0
2
88
5
54
51
0
0
48
1.00

Tables:   1

The End!