Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006711.1 Corchorus capsularis cultivar CVL-1 contig06732, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  6842

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37--88
26
2.0
26
100
0
104
38
15
34
11
1.83
38--96
26
2.3
26
93
0
100
40
16
32
10
1.82
3688--3749
16
4.4
16
66
29
50
58
3
17
20
1.53
3670--3749
40
2.0
39
97
2
151
58
2
17
21
1.50
3792--3899
32
3.3
32
94
3
182
54
6
16
22
1.65
3813--3865
17
3.2
17
66
28
51
52
9
15
22
1.70
3807--3936
32
4.5
28
87
7
106
53
6
15
23
1.66
3872--3934
26
2.4
26
89
2
99
53
3
15
26
1.57
3939--4048
22
5.0
22
78
10
111
56
1
26
15
1.49
3936--4012
29
2.6
31
84
10
99
57
0
28
14
1.38
3936--4154
7
30.7
7
68
15
112
55
2
24
17
1.55
4005--4197
35
5.5
35
87
6
266
53
4
23
18
1.61
4066--4376
15
21.8
14
66
17
68
54
4
21
20
1.61
3966--4197
71
3.3
71
89
4
328
53
3
24
18
1.59
4185--4371
22
8.6
21
73
14
114
55
4
18
21
1.61
4177--4240
29
2.2
28
83
10
76
54
4
20
20
1.62
4185--4492
43
7.1
44
73
17
198
53
5
19
21
1.65
4185--4383
15
13.8
14
68
15
93
54
5
19
21
1.63
4185--4449
43
6.3
43
76
16
211
53
5
19
21
1.65
4251--4376
22
5.8
22
78
12
152
53
4
19
21
1.63
4334--4408
35
2.1
36
90
5
116
52
6
21
20
1.69
4337--4418
35
2.3
35
87
2
101
52
6
20
20
1.68
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4365--4447
21
3.9
21
76
9
80
50
7
20
21
1.72
4239--4512
122
2.2
120
80
7
302
52
5
20
21
1.66
4295--4540
122
2.0
122
81
6
284
52
6
21
19
1.68
5684--5816
65
2.0
66
94
1
232
36
16
16
30
1.91

Tables:   1

The End!