Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006719.1 Corchorus capsularis cultivar CVL-1 contig06740, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33477

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3941--4103
60
2.7
60
84
1
220
36
18
17
26
1.93
3937--4104
31
5.6
30
67
13
103
35
18
17
27
1.94
4135--4299
31
5.5
31
68
21
134
27
19
19
33
1.96
4131--4295
60
2.8
60
91
0
276
27
19
19
33
1.96
6536--7558
441
2.3
433
82
6
1191
31
13
12
42
1.82
6536--7606
442
2.4
438
81
6
1247
30
13
12
42
1.81
8144--8200
16
3.6
15
76
9
51
47
31
12
8
1.72
10815--10919
48
2.1
51
94
5
189
35
7
5
51
1.54
10815--10889
24
3.1
24
63
14
64
33
9
6
50
1.61
10816--10896
27
3.2
27
64
25
77
32
9
6
51
1.60
11663--11688
12
2.2
12
100
0
52
23
11
7
57
1.59
20992--21016
1
25.0
1
100
0
50
100
0
0
0
0.00
21498--21523
2
13.0
2
100
0
52
50
0
0
50
1.00
23687--24164
167
2.9
164
82
6
618
29
15
16
37
1.90
26637--26680
22
2.0
22
100
0
88
45
4
13
36
1.64
27622--27701
39
2.1
39
100
0
160
22
16
7
53
1.67

Tables:   1

The End!