Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006720.1 Corchorus capsularis cultivar CVL-1 contig06741, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18489

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2551--2590
10
3.9
10
80
6
53
45
7
5
42
1.54
2553--2595
21
2.0
21
100
0
86
46
4
4
44
1.45
6301--6387
44
2.0
44
90
2
138
25
18
19
36
1.94
9731--9820
45
2.0
45
91
0
144
34
18
21
25
1.96
9872--10205
166
2.0
167
86
1
474
30
13
16
39
1.87
11991--12054
16
4.0
16
83
0
83
50
32
12
4
1.61
12211--12264
15
3.5
15
80
9
63
38
29
7
24
1.82
12214--12278
32
2.0
32
88
5
96
38
30
9
21
1.85
14366--14464
40
2.5
40
91
0
153
48
6
16
29
1.70
14427--14908
70
6.6
70
82
10
511
42
8
21
27
1.81
14513--14796
41
7.2
41
73
14
258
42
8
21
27
1.81
14554--14613
31
2.0
29
84
9
77
43
5
21
30
1.74
14567--14796
82
2.8
82
92
1
372
44
6
21
27
1.77
14788--14846
31
2.0
30
86
6
84
40
6
20
32
1.78
14889--15110
117
1.9
117
81
9
274
47
7
18
25
1.75
14926--15153
40
5.8
39
82
10
236
47
8
18
25
1.76
15163--15474
40
7.7
40
90
2
464
46
10
20
23
1.81
15163--15474
81
3.9
81
91
2
484
46
10
20
23
1.81
15163--15474
121
2.6
120
92
2
507
46
10
20
23
1.81
15166--15482
41
7.8
40
87
4
361
46
9
20
23
1.80
15470--15566
32
2.8
35
83
12
128
45
7
19
27
1.77
16979--17031
25
2.1
26
82
10
65
39
0
1
58
1.09

Tables:   1

The End!