Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006721.1 Corchorus capsularis cultivar CVL-1 contig06742, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15622

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2--182
38
4.8
38
93
1
292
22
35
19
22
1.96
291--331
20
2.0
20
85
0
55
53
24
2
19
1.57
2382--2556
91
1.9
91
100
0
350
42
18
9
30
1.81
5671--5764
45
2.2
44
88
7
140
38
20
5
36
1.75
6954--6980
14
1.9
14
100
0
54
29
29
0
40
1.57
6968--7609
35
18.1
35
86
3
831
32
17
10
38
1.84
7377--7484
16
6.2
17
69
18
53
34
16
9
39
1.81
7385--7497
19
6.5
16
68
21
52
33
16
9
39
1.82
7547--7602
17
3.2
17
71
14
60
33
10
16
39
1.83
10878--10922
22
2.0
22
87
8
65
6
20
15
57
1.60
14538--14613
40
2.0
39
89
7
120
51
2
22
23
1.61
14827--14939
35
3.2
34
79
7
129
52
4
19
23
1.64
14827--15041
35
6.0
35
79
8
123
54
2
21
21
1.57
14927--15041
7
15.7
7
72
6
68
57
0
22
19
1.46
14907--15066
36
4.4
36
86
3
198
56
1
22
18
1.51
14935--15066
36
3.6
36
90
2
201
57
2
22
17
1.51

Tables:   1

The End!