Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006728.1 Corchorus capsularis cultivar CVL-1 contig06749, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18770

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2368--2446
28
2.9
28
90
1
115
41
22
18
16
1.90
4374--4935
70
8.1
69
90
1
772
28
18
26
25
1.98
5406--5504
50
2.0
50
91
0
162
36
13
16
34
1.87
5789--5815
6
4.5
6
100
0
54
0
14
0
85
0.61
5771--5815
12
3.5
13
81
9
56
2
20
0
77
0.87
6911--7052
44
3.2
44
94
2
257
37
21
7
33
1.82
6977--7052
19
3.7
19
71
19
71
35
19
7
36
1.81
7061--7111
11
4.6
11
75
18
52
3
19
0
76
0.94
7512--7657
75
1.9
75
88
0
220
32
21
10
36
1.87
9839--9885
17
2.7
17
80
6
51
38
0
4
57
1.18
10458--10489
16
2.0
16
93
0
55
28
25
15
31
1.96
13362--13407
23
2.0
23
87
8
67
71
6
2
19
1.18
13835--14210
187
2.0
189
94
1
657
45
9
6
38
1.63
14157--14215
30
2.0
30
86
0
82
42
16
5
35
1.71
14240--14266
2
13.5
2
100
0
54
51
0
0
48
1.00
14527--14855
140
2.4
139
89
1
496
36
9
9
44
1.71
17474--17516
20
2.2
19
87
4
59
55
2
0
41
1.12
18414--18509
38
2.6
38
83
6
133
14
17
10
57
1.65

Tables:   1

The End!