genome.fa.s6729.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006729.1 Corchorus capsularis cultivar CVL-1 contig06750, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80699

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
274--366	38	2.5	38	82	6	127	15	18	10	55	1.67
1532--1569	19	1.9	19	85	15	51	31	5	0	63	1.17
1735--1859	22	5.7	22	72	12	87	35	12	16	36	1.86
1736--1859	44	2.8	43	84	4	142	35	12	16	35	1.86
1959--2102	22	6.6	22	76	11	127	36	7	20	36	1.81
2152--2357	22	9.3	22	70	12	118	43	9	14	33	1.77
2981--3014	15	2.3	15	90	10	52	61	5	5	26	1.42
6805--6834	11	2.7	11	94	0	51	0	23	0	76	0.78
14769--14974	22	9.6	22	71	16	105	40	9	13	36	1.77
14769--14953	44	4.3	43	70	16	134	41	8	12	36	1.74
14960--15015	22	2.5	22	82	2	67	33	12	12	41	1.81
15037--15099	22	2.8	22	78	2	54	31	14	17	36	1.90
15044--15099	22	2.5	22	82	2	67	30	12	19	37	1.89
15159--15204	21	2.1	22	88	4	67	54	2	10	32	1.47
15655--15679	2	12.5	2	100	0	50	52	0	0	48	1.00
18615--18640	13	2.0	13	100	0	52	84	0	15	0	0.62
18819--18863	7	6.7	7	76	19	51	68	0	28	2	1.01
21432--21504	33	2.3	31	86	11	96	8	24	42	24	1.82
21527--21558	12	2.7	12	95	0	55	9	25	43	21	1.82
26458--26501	23	1.9	23	100	0	88	22	13	18	45	1.84
31877--31909	14	2.4	14	94	0	57	51	0	18	30	1.46
31877--32350	36	12.6	36	70	18	211	44	4	21	28	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31898--31981	22	3.8	22	81	6	82	41	7	21	29	1.79
31884--31960	14	5.4	14	68	17	50	46	6	19	27	1.74
31972--32035	22	2.8	22	79	9	58	45	3	21	29	1.67
32067--32307	22	11.2	21	77	10	163	46	4	21	28	1.70
32088--32375	14	20.9	14	70	20	166	44	3	22	29	1.69
31883--32375	78	6.2	78	74	17	322	44	4	21	29	1.72
32014--32354	28	12.2	28	70	20	193	44	4	21	29	1.71
32103--32360	22	12.1	22	76	11	93	45	3	21	29	1.69
32377--32462	43	2.0	42	86	2	118	27	22	26	23	1.99
32532--32619	37	2.3	38	88	1	133	30	19	21	28	1.97
32663--32705	22	2.0	22	90	9	70	32	11	23	32	1.90
32721--32765	22	2.0	22	86	0	63	33	6	24	35	1.82
32575--32800	58	3.8	58	87	2	263	30	15	20	32	1.94
32778--32957	48	3.8	48	93	0	297	27	18	19	35	1.95
34078--34269	100	1.9	100	85	7	264	32	16	8	42	1.78
34532--34578	12	3.9	12	85	0	67	27	8	17	46	1.76
34866--34929	28	2.2	29	83	10	78	39	14	7	39	1.74
36126--36224	39	2.5	38	81	4	108	42	9	19	29	1.82
43656--43752	30	3.1	29	76	13	95	11	26	39	22	1.88
48911--48988	39	2.0	40	84	2	104	28	16	10	44	1.80
49038--49121	44	1.9	44	100	0	168	44	7	8	40	1.62
50092--50120	9	3.2	9	100	0	58	31	10	24	34	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56306--56341	13	2.8	13	87	12	56	16	44	8	30	1.77
56442--56523	41	2.0	41	85	4	112	26	10	19	42	1.84
65995--66046	22	2.4	22	93	0	86	40	7	13	38	1.73
70490--70521	11	2.8	12	86	13	50	34	0	18	46	1.49
72491--72523	11	3.0	11	86	13	50	36	0	18	45	1.49
74002--74031	14	2.1	14	100	0	60	53	26	6	13	1.64
75347--75381	3	11.3	3	93	6	61	62	0	2	34	1.10

Tables:   1

The End!