Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006734.1 Corchorus capsularis cultivar CVL-1 contig06755, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68726

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1882--2319
222
2.0
222
96
0
813
25
11
21
41
1.87
6636--6673
11
3.5
11
89
10
51
39
0
2
57
1.12
9470--9503
14
2.4
14
90
0
50
0
58
0
41
0.98
10262--10323
30
2.1
30
93
0
106
27
12
22
37
1.91
11967--11992
12
2.2
12
100
0
52
57
0
15
26
1.38
12969--13034
31
2.1
31
88
5
98
27
19
4
48
1.68
13134--13210
38
2.1
35
90
7
118
12
15
12
58
1.64
13347--13384
19
2.0
20
85
15
53
28
5
2
63
1.30
13405--13430
6
4.3
6
100
0
52
50
34
0
15
1.45
13561--13723
22
7.3
22
75
5
121
31
9
19
39
1.83
13759--13812
22
2.5
22
76
11
56
38
9
18
33
1.83
13834--14139
22
13.8
21
69
17
113
40
9
15
34
1.80
13946--14010
25
2.8
25
82
15
77
41
9
12
36
1.75
14264--14820
22
25.7
22
67
14
115
38
10
14
36
1.81
14455--14534
23
3.5
22
84
5
97
37
10
13
38
1.79
16100--16125
2
13.0
2
100
0
52
50
0
0
50
1.00
16453--16492
21
1.9
21
84
0
53
50
7
10
32
1.64
17688--17779
46
2.0
47
83
10
118
16
15
22
45
1.84
20981--21012
2
16.0
2
100
0
64
50
0
0
50
1.00
23118--23204
45
1.9
45
95
0
156
25
18
19
36
1.94
24149--24201
27
2.0
27
82
7
65
39
11
1
47
1.50
25751--25794
21
2.1
21
86
0
61
27
20
9
43
1.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
25769--26026
102
2.5
104
85
6
335
39
8
9
42
1.68
26510--26534
13
1.9
13
100
0
50
20
32
8
40
1.81
32128--32158
14
2.2
14
94
0
53
25
0
22
51
1.48
32132--32156
12
2.1
12
100
0
50
24
0
24
52
1.48
32500--32529
2
15.0
2
100
0
60
50
0
0
50
1.00
49199--49292
36
2.6
36
86
3
127
38
13
14
32
1.86
55290--55326
19
2.0
19
89
5
58
64
0
0
35
0.94
63238--63490
125
2.0
125
95
1
452
28
21
20
29
1.98
64706--64738
3
11.0
3
100
0
66
66
0
33
0
0.92

Tables:   1

The End!